View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_high_12 (Length: 447)
Name: NF13565_high_12
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Complemental strand, 11109145 - 11108699
Alignment:
| Q |
6 |
ctttagttgctaaggtgttcaaggcaaggtatttccctcgaagtaattttcttgggtcaaaattgggacataatcctagttttgtttggcgtagcatttt |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11109145 |
ctttagttgctaaggtgttcaaggcaaggtatttccctcgaagtaattttcttgggtcaaaattgggacataatcctagttttgtttggcgtagcatttt |
11109046 |
T |
|
| Q |
106 |
ctgaatggtggttaggcatggtacggggtggagaattggcagtggctttgatatttcaatgattgatgaaccttggataggaatgggac-------tccc |
198 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
11109045 |
ttgaatggtggttaggcatggtacgaggtggagaattggcaatggctttgatatttcaatgattgatgaaccttggataggaatggaactgcgtgttccc |
11108946 |
T |
|
| Q |
199 |
cctgctgcccccggatgctttgtctcttcaaagttattcggtaggtcatttgattcatcaagatac-------------gaagaacttgtaagatttatt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11108945 |
cctgctgcccccggatgctttgtctcttcaaagttattcggtaggtcatttgattcatcaagatacgaagacttggaatgaagaacttgtaagatttatt |
11108846 |
T |
|
| Q |
286 |
ttcgaggcaggaacagctcaacaaatattggatacgccgttatttccgcaactgaatgaggataagatggtttggaaacccaagaagaatgaacaatatt |
385 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11108845 |
tttgaggcaggtacagctcaacaaatattggatacgccgttatttccgcaactgaatgaggataagatggtttggaaacccgagaagaatgaacaatatt |
11108746 |
T |
|
| Q |
386 |
cggttaggagtacttaccggatttttgtggaagagattgtggatgtt |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11108745 |
cggttaggagtacttaccggatttttgtggaagagattgtggatgtt |
11108699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 427
Target Start/End: Complemental strand, 11595303 - 11594863
Alignment:
| Q |
6 |
ctttagttgctaaggtgttcaaggcaaggtatttccctcgaagtaattttcttgggtcaaaattgggacataatcctagttttgtttggcgtagcatttt |
105 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
11595303 |
ctttatttgctaaggtgttcaaggcaagctattcccctcgtagtaattttcttgggtcaaaattgggacataatcctagttttgtctgccgtagcatttt |
11595204 |
T |
|
| Q |
106 |
ctgaatggtggttaggcatggtacggggtggagaattggcagtggctttgatatttcaatgattgatgaaccttggataggaatggga-------ctccc |
198 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
11595203 |
ctgaatggtggttaggcatggtacgaggtggagaattggcagtggctttgatatttcaatgattgatgaaccttggatagaaatgggactgcgtgctccc |
11595104 |
T |
|
| Q |
199 |
cctgctgcccccggatgctttgtctcttcaaagttattcggtaggtcatttgattcatcaagatac-------------gaagaacttgtaagatttatt |
285 |
Q |
| |
|
||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
11595103 |
cctgcag-ccccggatgctttgtctcttcaaggttattcggtaggtcatttgattcatcaagatacgaagacttggaatgaagaatttgtaagatttatt |
11595005 |
T |
|
| Q |
286 |
ttcgaggcaggaacagctcaacaaatattggatacgccgttatttccgcaactgaatgaggataagatggtttggaaacccaagaagaatgaacaatatt |
385 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||| ||||||||| |||||||| |
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|
| T |
11595004 |
tttgaggcaggaacatctcaacaaatattggatacgccattatttctgcaagtgaatgaggataaaatggtttggaaacccgagaagaatggacaatatt |
11594905 |
T |
|
| Q |
386 |
cggttaggagtacttaccggatttttgtggaagagattgtgg |
427 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||| |
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|
| T |
11594904 |
cggttaggagtgcttaccgggtttgtgtggaagagattgtgg |
11594863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 64 - 422
Target Start/End: Original strand, 41469268 - 41469651
Alignment:
| Q |
64 |
aaaattgggacataatcctagttttgtttggcgtagcattttctg------aatggtggttaggcatggtacggggtggagaattggcagtggctttgat |
157 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||||||||||| | |||||||||||||||||||||| |||||| ||||||||| |||| ||| |
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| T |
41469268 |
aaaattaggacacaatcctagttttgtatggcgtagcatttttagtgcgaaaatggtggttaggcatggtacgaggtggataattggcagcggctatgac |
41469367 |
T |
|
| Q |
158 |
atttcaatgattgatgaaccttggataggaatgggact-------ccccctgctgcccccggatgctttgtctcttcaaagttattcggtaggtcatttg |
250 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||| ||| ||| |||| ||||||||||||| |||||| |
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| T |
41469368 |
atttcaatgatcaatgaaccttggataggaatgggactgcgtgttccccctgcagcccc-ggatgatttatcttatcaaggttattcggtaggacatttg |
41469466 |
T |
|
| Q |
251 |
attcatcaagatacgaaga-------------acttgtaagatttattttcgaggcaggaacagctcaacaaatattggatacgccgttatttccgcaac |
337 |
Q |
| |
|
|||||||||||| ||||| |||||| | || |||||| ||||||||||||||||| ||||| || ||||||| || |||| |||| |
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|
| T |
41469467 |
attcatcaagatgtgaagacttggaatgaaccacttgtcatatgtatttttgaggcaggaacagctcagcaaattctgaatacgcctttgtttctgcaag |
41469566 |
T |
|
| Q |
338 |
tgaatgaggataagatggtttggaaacccaagaagaatgaacaatattcggttaggagtacttaccggatttttgtggaagagat |
422 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||| |||| ||||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
41469567 |
tgaatgaggataagcttgtttggaaaccggagaaaaatggacaatattcggttaggagtgcttaccgagtttgtgtggaagagat |
41469651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 3237259 - 3237358
Alignment:
| Q |
6 |
ctttagttgctaaggtgttcaaggcaaggtatttccctcgaagtaattttcttgggtcaaaattgggacataatcctagttttgtttggcgtagcatttt |
105 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||| |||| |||||| ||| ||||| ||||| ||||| |||||||||||||||||||| |||||||| |
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|
| T |
3237259 |
ctttagtttccaaggttttcaaggcaaggtattatcctcatggtaattatctcgggtccaaattaggacacaatcctagttttgtttggcggagcatttt |
3237358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 14505298 - 14505264
Alignment:
| Q |
69 |
tgggacataatcctagttttgtttggcgtagcatt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
14505298 |
tgggacataatcctagttttgtttggcgaagcatt |
14505264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 15788768 - 15788805
Alignment:
| Q |
65 |
aaattgggacataatcctagttttgtttggcgtagcat |
102 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
15788768 |
aaattaggacataatccaagttttgtttggcgtagcat |
15788805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 16331508 - 16331607
Alignment:
| Q |
6 |
ctttagttgctaaggtgttcaaggcaaggtatttccctcgaagtaattttcttgggtcaaaattgggacataatcctagttttgtttggcgtagcatttt |
105 |
Q |
| |
|
|||||||| | ||||| |||| ||||||||||| |||| |||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
16331508 |
ctttagtttccaaggttttcagtgcaaggtattttcctcatggtaattatctcaggtcaaaattaggacataatcctagttttgtttggcggagcatttt |
16331607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 33097841 - 33097929
Alignment:
| Q |
17 |
aaggtgttcaaggcaaggtatttccctcgaagtaattttcttgggtcaaaattgggacataatcctagttttgtttggcgtagcatttt |
105 |
Q |
| |
|
||||| |||||| |||||||||| |||| | |||| ||| ||||||||||| |||||||||||||||||| ||||||| |||||||| |
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|
| T |
33097841 |
aaggttttcaagtcaaggtattttcctcatggcaattatctcgggtcaaaattaggacataatcctagttttctttggcggagcatttt |
33097929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 7091668 - 7091628
Alignment:
| Q |
65 |
aaattgggacataatcctagttttgtttggcgtagcatttt |
105 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||| |
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|
| T |
7091668 |
aaattgggacataatccaagctttgtttggcgtagtatttt |
7091628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 8723435 - 8723472
Alignment:
| Q |
65 |
aaattgggacataatcctagttttgtttggcgtagcat |
102 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
8723435 |
aaattaggacataatccaagttttgtttggcgtagcat |
8723472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 26691096 - 26691133
Alignment:
| Q |
69 |
tgggacataatcctagttttgtttggcgtagcattttc |
106 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |
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|
| T |
26691096 |
tgggacataatccaagctttgtttggcgtagcattttc |
26691133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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