View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_high_13 (Length: 426)
Name: NF13565_high_13
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 13333577 - 13333185
Alignment:
| Q |
18 |
gatggctcccaagaagaaggagaggccaaaactgtgtggagatgggttgccaagttggtcctttttagttaattgtagtactccatttgttgtgttggca |
117 |
Q |
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| T |
13333577 |
gatggctcccaagaagaaggagaggccaaaactgtgtggagatgggttgccaagttggtcctttttagttaattgtagtactccattcgttgtgttggca |
13333478 |
T |
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| Q |
118 |
tcaccatcaataatgatgcttttagtatcggtgtcaaatttggggaagttgaaagaaaatgagtctgatttgacattggtgattaacaagagaaaggtta |
217 |
Q |
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| T |
13333477 |
tcaccatcaataatgatgcttttagtatcggtgtcaaatttggggaagttgaaagaaaatgagtctgatttgacattggtgattaacaagagaaaggtta |
13333378 |
T |
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| Q |
218 |
aaaggaaaacagagaaggggttttgtgtcacaaggagctttgggttagagttggccattgtagtagtgttgtgaatgatgcaaagagcaaaggggttaat |
317 |
Q |
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| T |
13333377 |
aaaggaaaacagagaaggggttttgtgtcacaaggagctttgggtttgagttggccattgtagtagtgttgtgaatgatgcaaagagcaaaggggttaat |
13333278 |
T |
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| Q |
318 |
ccatctatatataggctttttgtatttggattttataaggttgnnnnnnngcagaataattattaatattggtaaaactaatgcaacaatatt |
410 |
Q |
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| T |
13333277 |
ccatctatatataggctttttgtatttggattttataaggttgtttttttgcagaataattattaatattggtaaaactaatgcaacaatatt |
13333185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 36 - 351
Target Start/End: Complemental strand, 13308403 - 13308081
Alignment:
| Q |
36 |
ggagaggccaaaactgtgtggagatgggttgccaagttggtcctttttagttaattgtagtactccatttgttgtgttggcatcaccatcaataatgatg |
135 |
Q |
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| T |
13308403 |
ggagaagccaacactatgtggagatggattgccaaattggtcctttttagtcaattgtagtactccacctgttgttttggcatcaccgtcgatgacaatg |
13308304 |
T |
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| Q |
136 |
cttttagtatcggtgtcaaatttggggaagttgaaagaaaatgagtctgatttgacattggtgattaacaagagaaa---------ggttaaaaggaaaa |
226 |
Q |
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|| | |||||| || |||||||||||||||||||| |||||||| || ||||| ||| |||||||||| || || | || ||||| ||| |
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| T |
13308303 |
tttagggcatcggtatcgaatttggggaagttgaaagataatgagtccgacttgacgttgttgattaacaaaagtaaaaagaagaagattgaaagggaaa |
13308204 |
T |
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| Q |
227 |
cagagaaggggttttgtgtcacaaggagctttgggttagagttggccattgtagtagtgttgtgaatgatgcaaagagcaaaggggttaatccatctata |
326 |
Q |
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| T |
13308203 |
cagagaaggggttttgtgttgcaaggagttttggtatggagttggccatggtatta-tgttgtgtatgatgcatatagcaaagggattagtccatctata |
13308105 |
T |
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| Q |
327 |
tataggctttttgtatttggatttt |
351 |
Q |
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| T |
13308104 |
tataggc-ttttgtatttcgatttt |
13308081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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