View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13565_high_15 (Length: 400)

Name: NF13565_high_15
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13565_high_15
NF13565_high_15
[»] chr2 (13 HSPs)
chr2 (19-361)||(44614515-44614857)
chr2 (67-380)||(44623751-44624067)
chr2 (83-193)||(39458954-39459064)
chr2 (111-217)||(39473637-39473743)
chr2 (83-219)||(39137521-39137657)
chr2 (83-172)||(39152307-39152396)
chr2 (111-229)||(39415040-39415158)
chr2 (83-214)||(39487723-39487854)
chr2 (111-217)||(39422018-39422124)
chr2 (322-379)||(39152579-39152636)
chr2 (19-80)||(44623661-44623722)
chr2 (185-227)||(39215415-39215457)
chr2 (322-371)||(39468343-39468392)
[»] chr8 (4 HSPs)
chr8 (67-176)||(40347398-40347507)
chr8 (317-380)||(45342049-45342112)
chr8 (18-218)||(44951213-44951413)
chr8 (27-80)||(40347316-40347369)
[»] chr6 (1 HSPs)
chr6 (322-376)||(16113303-16113357)
[»] chr7 (1 HSPs)
chr7 (83-219)||(19807471-19807607)


Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 44614515 - 44614857
Alignment:
Q  19 agaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44614515 agaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaagggtgaatttgaaggcctggtggaggactttgaatcaga 44614614  T
Q  119 aaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaagagtgaaggagttccagtcagaagaggaggaatttaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614615 aaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaagagtgaaggagttccagtcagaagaggaggaatttaaa 44614714  T
Q  219 ggtcgagtgaaaatgtttgaaacaaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614715 ggtcgagtgaaaatgtttgaaacaaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcac 44614814  T
Q  319 tcgagttaaaagagaatcagattgaagtacaaatcaaggatct 361  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44614815 tcgagttaaaagagaatcagattgaagtacaaatcaaggatct 44614857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 67 - 380
Target Start/End: Original strand, 44623751 - 44624067
Alignment:
Q  67 ttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaa 166  Q
    |||| ||| ||||||||||||| ||||||||  ||| |||||||||||||||||| | | |||||||||| ||||||||||| |||||||||||||||||    
T  44623751 ttgaatctaaaaagggtgaattggaaggcctattgagggactttgaatcagaaaaaacgaatttcgagagacgacaaaaggagtttgaatcaaaagaaaa 44623850  T
Q  167 ggaatttgaaagaagagtgaaggagttccagtcagaagaggaggaatttaaaggtcgagtgaaaatg---tttgaaacaaaggtagaggaatttgaagga 263  Q
    |||||| |||| |||||||| ||||||||| ||| |||| ||||||||||||| || ||||||| |    |||||| |||||| |||| |||| |||| |    
T  44623851 ggaattcgaaataagagtgatggagttccaatcaaaagaagaggaatttaaagttcaagtgaaagtactttttgaagcaaaggaagagaaattcgaagta 44623950  T
Q  264 aaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatcagattgaagtacaaatcaaggatcttg 363  Q
    |||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  44623951 aaaatgcagcaatttgaaaatcaagttgaggacaatctcaaatctgtcaaagcactcgaattaaaagagaatcagattgaagtacaaatcaaggatctta 44624050  T
Q  364 agtcaaagctgaataat 380  Q
    |||||||||||||||||    
T  44624051 agtcaaagctgaataat 44624067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 39458954 - 39459064
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaaga 182  Q
    |||||||||||||| ||||||||| || ||||||||||||||||||||||||||| | |  |||||  | ||||||||||||||| |||||||| ||  |    
T  39458954 tgaatttgaaggccgggtgaaggagttggaatcagaaaagaagcatttcgagagcaggctgaaggagctcgaatcaaaagaaaagcaatttgaaggacaa 39459053  T
Q  183 gtgaaggagtt 193  Q
    |||||||||||    
T  39459054 gtgaaggagtt 39459064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 39473743 - 39473637
Alignment:
Q  111 gaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaagagtgaaggagttccagtcagaagaggagg 210  Q
    |||||||||||||||||||||||||||| ||  |||||  | ||||||||||||||| ||||| |  ||  ||||||||||||||||||| |||||||||    
T  39473743 gaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggagg 39473644  T
Q  211 aatttaa 217  Q
    |||||||    
T  39473643 aatttaa 39473637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 39137521 - 39137657
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaaga 182  Q
    |||||||||||||  |||||||||  | ||||| |||||||||||||| ||||||||||| ||| |  ||||| || |||||||| ||| ||||  |  |    
T  39137521 tgaatttgaaggcagggtgaaggaactcgaatctgaaaagaagcattttgagagccgacagaagcagcttgaaacacaagaaaagcaatatgaagaacaa 39137620  T
Q  183 gtgaaggagttccagtcagaagaggaggaatttaaag 219  Q
     ||||||||||||||||| |||| |||||||| ||||    
T  39137621 atgaaggagttccagtcaaaagaagaggaattcaaag 39137657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 39152307 - 39152396
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatt 172  Q
    |||||||||||||| ||||||| |  | |||||||||||||||||||||||||||||||  |||||  | |||||||  |||||||||||    
T  39152307 tgaatttgaaggccaggtgaagaagctggaatcagaaaagaagcatttcgagagccgactgaaggagctcgaatcaatggaaaaggaatt 39152396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 39415158 - 39415040
Alignment:
Q  111 gaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaa-gagtgaaggagttccagtcagaagaggag 209  Q
    ||||||||||||||||||||||| |||| ||  |||||  ||||||||||||||||  || || |||||| || |||| |||||||||||| ||||||||    
T  39415158 gaatcagaaaagaagcatttcgaaagccaactgaaggagcttgaatcaaaagaaaatcaa-ttcaaagaacgaatgaaagagttccagtcaaaagaggag 39415060  T
Q  210 gaatttaaaggtcgagtgaa 229  Q
    ||| | ||||| | ||||||    
T  39415059 gaactcaaaggacaagtgaa 39415040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 39487854 - 39487723
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaaga 182  Q
    |||||||||||||| |||||||||    ||||| |||||||||||||  ||||||||||| |||||  | ||| || |||||||| ||  ||||  |  |    
T  39487854 tgaatttgaaggccgggtgaaggagcccgaatctgaaaagaagcattctgagagccgacagaaggagctcgaagcacaagaaaagcaacatgaagaacaa 39487755  T
Q  183 gtgaaggagttccagtcagaagaggaggaatt 214  Q
     ||||||||||||||||| |||||||||||||    
T  39487754 atgaaggagttccagtcaaaagaggaggaatt 39487723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 39422124 - 39422018
Alignment:
Q  111 gaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaagagtgaaggagttccagtcagaagaggagg 210  Q
    |||||||||||||||||||| || |||||||  |||||  | ||||||| ||||||| |||| ||  ||  | |||||||||||| |||| |||||||||    
T  39422124 gaatcagaaaagaagcattttgaaagccgactgaaggatctcgaatcaatagaaaagaaattcgatggacaaatgaaggagttcctgtcaaaagaggagg 39422025  T
Q  211 aatttaa 217  Q
    |||||||    
T  39422024 aatttaa 39422018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 39152579 - 39152636
Alignment:
Q  322 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataa 379  Q
    ||||||||||||| ||| |||||||| ||  ||||||||||||||||||||| |||||    
T  39152579 agttaaaagagaagcagcttgaagtagaagccaaggatcttgagtcaaagctaaataa 39152636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 44623661 - 44623722
Alignment:
Q  19 agaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaag 80  Q
    |||| |||||| ||||||||||||||| ||||||| | ||||||||| ||||| ||||||||    
T  44623661 agaagtgctgcgaagagctagaaaatatggagacccaagttaaggaatttgagactgaaaag 44623722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 39215415 - 39215457
Alignment:
Q  185 gaaggagttccagtcagaagaggaggaatttaaaggtcgagtg 227  Q
    |||||||||||||||| || |||||||||||||||||| ||||    
T  39215415 gaaggagttccagtcaaaacaggaggaatttaaaggtcaagtg 39215457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 39468343 - 39468392
Alignment:
Q  322 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaag 371  Q
    ||||||||||||| |||||||||| |||| ||||||| ||| ||||||||    
T  39468343 agttaaaagagaagcagattgaaggacaagtcaaggaacttcagtcaaag 39468392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 40347398 - 40347507
Alignment:
Q  67 ttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaa 166  Q
    |||| ||| ||||||||||||||||| | ||| ||||||||||||||||||||||   | |||||||||||||||||||||| |||||||||||||||||    
T  40347398 ttgaatctaaaaagggtgaatttgaatggctgatgaaggactttgaatcagaaaaattgaatttcgagagccgacaaaaggagtttgaatcaaaagaaaa 40347497  T
Q  167 ggaatttgaa 176  Q
    ||| ||||||    
T  40347498 ggagtttgaa 40347507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 45342049 - 45342112
Alignment:
Q  317 actcgagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataat 380  Q
    |||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  45342049 actccagttaaaagagaatcagtttgaagtgcaaatcaaggaccttgagtcaaagctgaataat 45342112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 44951413 - 44951213
Alignment:
Q  18 aagaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcag 117  Q
    ||||| |||||| ||||||| ||||||||||||||| | ||||| |||||||||||| |||||  |  | ||   ||||  || ||||| |||||||| |    
T  44951413 aagaagtgctgcgaagagcttgaaaataaggagacccaagttaatgaacttgagtctaaaaagaatatacttattggccgagtaaaggagtttgaatctg 44951314  T
Q  118 aaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaa-gagtgaaggagttccagtcagaagaggaggaattta 216  Q
    ||||    |||||||||| ||||   ||||| |||||||||| ||||||  || || ||||||  || ||||||||| |||||| |||||||||||||||    
T  44951313 aaaaagcacatttcgagatccgaatgaaggagtttgaatcaagagaaaa-taaattcaaagaacaagagaaggagtttcagtcaaaagaggaggaattta 44951215  T
Q  217 aa 218  Q
    ||    
T  44951214 aa 44951213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 40347316 - 40347369
Alignment:
Q  27 tgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaag 80  Q
    ||||||||||||||||||| ||||||| | |||||| ||||||| |||||||||    
T  40347316 tgcaaagagctagaaaatatggagacccaagttaagaaacttgaatctgaaaag 40347369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 16113303 - 16113357
Alignment:
Q  322 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaa 376  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  16113303 agttaaaagagaagcagattgaagtacaagtcaaggagcttgagtcaaagctgaa 16113357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 19807471 - 19807607
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaaga 182  Q
    |||||||||||||| || ||||||  | ||||| |||||||||||||||||||||||||| |||    | ||| || |||||||| ||| ||||  |  |    
T  19807471 tgaatttgaaggccgggcgaaggagctcgaatctgaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaa 19807570  T
Q  183 gtgaaggagttccagtcagaagaggaggaatttaaag 219  Q
     ||||||||||||||||| |||| |||||||| ||||    
T  19807571 atgaaggagttccagtcaaaagaagaggaattcaaag 19807607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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