View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_high_17 (Length: 385)
Name: NF13565_high_17
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_high_17 |
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| [»] scaffold1064 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 132 - 368
Target Start/End: Complemental strand, 9182522 - 9182286
Alignment:
| Q |
132 |
ttttcaagagaaactattgtttataaaatctacactatggtgcaaattgaaataatgtatttctacactgataatttaacaattgtgacaaggaaaatga |
231 |
Q |
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| T |
9182522 |
ttttcaagagaaactattgtttataaaatctacactatggtgcaaattgaaataatgtatttctacactgataatttaacaattgtgacaaggaaaatga |
9182423 |
T |
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| Q |
232 |
tataacagaatcattaatttagtctctaaaattatacgattttgcaatgatacacatctgccatgctacttatattcaaataaaatgataggagttaacc |
331 |
Q |
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| T |
9182422 |
tataacagaatcattaatttagtctctaaaattatacgattttgcaatgatacacatctgccatgctacttatattcaaataaaatgataggagttaacc |
9182323 |
T |
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| Q |
332 |
ataaaatttaatccctaaaattatagtagctattttg |
368 |
Q |
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| T |
9182322 |
ataaaatttaatccctaaaattatagtagctattttg |
9182286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 73 - 367
Target Start/End: Original strand, 9164211 - 9164502
Alignment:
| Q |
73 |
gcctgacgcttcacaatcaaggtattctgacaaggaaaattatttaaatgatcaattatttttcaagagaaactattgtttataaaatctacactatggt |
172 |
Q |
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| T |
9164211 |
gcctgactcttcacaatcaaggtattctgacaagtaaaattatttaaatgatcaataatttttgaagagaaaccaatgtttataaaatgtacactatggt |
9164310 |
T |
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| Q |
173 |
gcaaattgaaataatgtatttctacactgataatttaacaattgtgacaaggaaaatgatataacagaatcattaatttagtctctaaaattatacgatt |
272 |
Q |
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| T |
9164311 |
ataaattgaagtaatgtacttctacactaataatttaacaattgtgacaaggaaaatgatataacagaattatcaatttagtcactaaaattgtacgatt |
9164410 |
T |
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| Q |
273 |
ttgcaatgatacacatctgccatgctacttatattcaaataaaatgataggagttaaccataaaatttaatccctaaaattatagtagctatttt |
367 |
Q |
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| T |
9164411 |
ttgcaatgatacatatttgctatg---cttatatttaaagaaaatgataggagttaaccataaaatttaatccctaaaattatagtagctatttt |
9164502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 9182633 - 9182542
Alignment:
| Q |
55 |
cagcaacattcgtttttggcctgacgcttcacaatcaaggtattctgacaaggaaaattatttaaatgatcaattatttttcaagagaaact |
146 |
Q |
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| T |
9182633 |
cagcaacattcgtttttggcctgacgcttcacaatcaaggtattctgacaaggaaaattatttaaatgatcaattatttttcaagagaaact |
9182542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 9239683 - 9239601
Alignment:
| Q |
58 |
caacattcgtttttggcctgacgcttcacaatcaaggtattctgacaaggaaaattatttaaatgatcaattatttttcaaga |
140 |
Q |
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| T |
9239683 |
caacaatcgtctttggcctcacacttcacaatcagggtattctgacaaggaaaatgatttaaacgatcaataatttttcaaga |
9239601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 367
Target Start/End: Complemental strand, 9262141 - 9262042
Alignment:
| Q |
268 |
cgattttgcaatgatacacatctgccatgctacttatattcaaataaaatgataggagttaaccataaaatttaatccctaaaattatagtagctatttt |
367 |
Q |
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| T |
9262141 |
cgattttgcaataatacatattaactatgctacttatattcaaggaaaatgagtggagtgaaccatacaatttaatccctaaaattgtagtagttatttt |
9262042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 3006 - 2924
Alignment:
| Q |
58 |
caacattcgtttttggcctgacgcttcacaatcaaggtattctgacaaggaaaattatttaaatgatcaattatttttcaaga |
140 |
Q |
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| T |
3006 |
caacaatcgtctttggcctcacacttcacaatcagggtattctgacaaggaaaatgatttaaacgatcaataatttttcaaga |
2924 |
T |
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