View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_high_22 (Length: 360)
Name: NF13565_high_22
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_high_22 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 43307850 - 43307518
Alignment:
| Q |
14 |
aacctgtgagattcttgaatagttcaatagatattaaagggaatgatttccatttgattccatttggagcagggagaaggggttgtcctgggatagttta |
113 |
Q |
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| T |
43307850 |
aacctgagagattcttgaatagttcaatagatattaaagggaatgatttccatttgattccatttggagcagggagaaggggttgtcctgggatagttta |
43307751 |
T |
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| Q |
114 |
tgctatggttgccaatgaacttgtgttagccaaccttgtacatcaatttaattgggaattacctggattggaaaccttggacatgtctgaaacatttggt |
213 |
Q |
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| T |
43307750 |
tgctatggttgccaatgaacttgtgttagccaaccttgtacatcaatttaattgggaattacctggattggaaaccttggacatgtctgaaacatttggt |
43307651 |
T |
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| Q |
214 |
ttaaccatgcatagaaagactcctcttttggcagttgcaacccttaagaataagtaaaagaagtggtgggatcacaatttggctttttggaaaaatgttt |
313 |
Q |
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| T |
43307650 |
ttaaccatgcatagaaagactcctcttttggcagttgcaacccttaagaataagtaaaagaggtggtgggatcacaatttggctttttggaaaaatgttt |
43307551 |
T |
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| Q |
314 |
aatatatttggtaatcttagggatacatccttt |
346 |
Q |
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| T |
43307550 |
aatatatttggtaatcttagggatacatccttt |
43307518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 43267246 - 43267008
Alignment:
| Q |
21 |
gagattcttgaatagttcaatagatattaaagggaatgatttccatttgattccatttggagcagggagaaggggttgtcctgggatagtttatgctatg |
120 |
Q |
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| T |
43267246 |
gagattcttgaattgttcaatagatgttaaaggaaaagatttccaggtgattccatttggagctggcagaaggggttgtcctggggcagtttatgctacg |
43267147 |
T |
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| Q |
121 |
gttgccaatgaacttgtgttagccaaccttgtacatcaatttaattgggaattacctgg-attg--gaaaccttggacatgtctgaaacatttggtttaa |
217 |
Q |
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| T |
43267146 |
gctgtcaatgatcttgtgttggcaaaccttgtacatcaatttaactgggaattacctggtgctgctgaaggattggacatgtctgaatcgtttggcttca |
43267047 |
T |
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| Q |
218 |
ccatgcatagaaagactcctcttttggcagttgcaaccc |
256 |
Q |
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| T |
43267046 |
cagtgcatagaaagattcctcttatggcaattgcaaccc |
43267008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 43287047 - 43286809
Alignment:
| Q |
21 |
gagattcttgaatagttcaatagatattaaagggaatgatttccatttgattccatttggagcagggagaaggggttgtcctgggatagtttatgctatg |
120 |
Q |
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| T |
43287047 |
gagattcttgaattgttcaatagatgttaaaggaaaagatttccaggtgattccatttggagctggcagaaggggttgtcctggggcagtttatgctacg |
43286948 |
T |
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| Q |
121 |
gttgccaatgaacttgtgttagccaaccttgtacatcaatttaattgggaattacctgg-attg--gaaaccttggacatgtctgaaacatttggtttaa |
217 |
Q |
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| T |
43286947 |
gctgtcaatgatcttgtgttggcaaaccttgtacatcaatttaactgggaattacctggtgctgctgaaggattggacatgtctgaatcgtttggcttca |
43286848 |
T |
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| Q |
218 |
ccatgcatagaaagactcctcttttggcagttgcaaccc |
256 |
Q |
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| T |
43286847 |
cagtgcatagaaagattcctcttatggcaattgcaaccc |
43286809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 43274511 - 43274353
Alignment:
| Q |
21 |
gagattcttgaatagttcaatagatattaaagggaatgatttccatttgattccatttggagcagggagaaggggttgtcctgggatagtttatgctatg |
120 |
Q |
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| T |
43274511 |
gagattcttgaataatccaatagatattaaaggaaatgatttgatattgactccatttggagcagggagaaggggttgccctggagtagtgtatgctata |
43274412 |
T |
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| Q |
121 |
gttgccaatgaacttgtgttagccaaccttgtacatcaatttaattgggaattacctgg |
179 |
Q |
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| T |
43274411 |
gctgccaatgaaattgtgttagccaatcttatacatcaatttgattgggaattacctgg |
43274353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 91268 - 91121
Alignment:
| Q |
21 |
gagattcttgaatagttcaatagatattaaagggaatgatttccatttgattccatttggagcagggagaaggggttgtcctgggatagtttatgctatg |
120 |
Q |
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|||||||||||| ||| ||| ||||||||||| ||||||| || ||||| || ||||| || || ||||||||||||||||| ||| || ||||||| |
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| T |
91268 |
gagattcttgaaaagtgaaattgatattaaaggacatgattttcagttgataccttttggtgctggtagaaggggttgtcctggaataagttttgctatg |
91169 |
T |
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| Q |
121 |
gttgccaatgaacttgtgttagccaaccttgtacatcaatttaattgg |
168 |
Q |
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| T |
91168 |
gttgttaatgagttggttttagctaatcttgttcatcaatttgattgg |
91121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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