View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13565_high_4 (Length: 560)
Name: NF13565_high_4
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 9 - 541
Target Start/End: Complemental strand, 13212944 - 13212412
Alignment:
| Q |
9 |
gacgacggcggtagcggaagtgctggtggaggaagtggtggtgagatgggaagaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccac |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212944 |
gacgacggtggtagcggaagtgctggtggaggaagtggtggtgagatgggaagaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccac |
13212845 |
T |
|
| Q |
109 |
ctatcatcatcacgagggacagcgcgaacgcactccgatcccacgtgatggaagttgcaaatggatgtgacatcatggaaagtgtgacggtctttgcgcg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212844 |
ctatcatcatcacgagggacagcgcgaacgcactccgatcccacgtgatggaagttgcaaatggatgtgacatcatggaaagtgtgacggtctttgcgcg |
13212745 |
T |
|
| Q |
209 |
aaggaggcagcgtggtgtctgcatccttagcggaagtgggaccgtcacaaacgtgactctccgtcaaccagcatcgcctggtgcggtagtcacacttcat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212744 |
aaggaggcagcgtggtgtctgcatccttagcggaagtgggaccgtcacaaacgtgactctccgtcaaccagcatcgcctggtgcggtagtcacacttcat |
13212645 |
T |
|
| Q |
309 |
ggaagatttgagatattatcattatctggctctttcctgccgccgcctgctccaccagcggcgtcaggattagccatatatctagctggtggacaaggac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212644 |
ggaagatttgagatattatcattatctggctctttcctgccgccgcctgctccaccagcggcgtcaggattagccatatatctagctggtggacaaggac |
13212545 |
T |
|
| Q |
409 |
aggtcgtcggtggtagcgtggtgggaccgttgttagcttccggtccggttgttatcatggcagcttcctttggaaatgctgcttatgaaaggctaccttt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212544 |
aggtcgtcggtggtagcgtggtgggaccgttgttagcttccggtccggttgttatcatggcagcttcctttggaaatgctgcttatgaaaggctaccttt |
13212445 |
T |
|
| Q |
509 |
agaagatgaagaaacaccagtgaatgtgccagg |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
13212444 |
agaagatgaagaaacaccagtgaatgtgccagg |
13212412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 3332436 - 3332356
Alignment:
| Q |
59 |
aagaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatcatcatcacgagggacagcgcgaacgc |
139 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||||||||||||||| || |||||||| | |||||||| ||||| |
|
|
| T |
3332436 |
aagaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgc |
3332356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 16578617 - 16578665
Alignment:
| Q |
61 |
gaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacc |
109 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
16578617 |
gaagaccaagaggaagaccacccggttcaaaaaacaaaccaaaaccacc |
16578665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 32803278 - 32803226
Alignment:
| Q |
61 |
gaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatc |
113 |
Q |
| |
|
|||||||||||||||||||| | || || ||||||| |||||||||||||||| |
|
|
| T |
32803278 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacctatc |
32803226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 46200932 - 46200969
Alignment:
| Q |
90 |
aaaaacaaaccaaaaccacctatcatcatcacgaggga |
127 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
46200932 |
aaaaacaaaccaaaaccacctattatcatcacaaggga |
46200969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University