View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_high_5 (Length: 546)
Name: NF13565_high_5
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Original strand, 42183703 - 42184224
Alignment:
| Q |
16 |
aaaagaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcatatgcatagaggtcgtccccgttcaagaa |
115 |
Q |
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| T |
42183703 |
aaaagaacagatggtaaaaaatggagatgttctaaagatgtagctcttaataacaggtattgtgaaaggcatatgcatagaggtcgtccccgttcaagaa |
42183802 |
T |
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| Q |
116 |
agcctgtggaacttcacacaaataacaatagcaatagtcatcatcaaatcaaaaaggctcgttgtgattctaaccctttttctgtgcctgattttactat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42183803 |
agcctgtggaacttcacacaaataacaatagcaatagtcatcatcaaatcaaaaaggctcgttgtgattctaaccctttttctgtgcctgattttactgt |
42183902 |
T |
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| Q |
216 |
ggctgctcctaatccaactacaagaaaatatggatcttcatcacattttcttgcttctactccccttcatccttatctccaatcttcccttgctttgcat |
315 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42183903 |
ggctgttcctaatccaactacaagaaaatatggatcttcatcacattttcttgcttctactccccttcatccttatctccaatcttccctttctttgcat |
42184002 |
T |
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| Q |
316 |
aatagcagctttgagggttcaaataagcaaccaaggtgagtttatatctgtcttttgctatatctgtttagaatcacatgttttgattcatatcatatga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42184003 |
aatagcagctttgagggttcaaataagcaaccaaggtgagtttatatctgtattttgctatatctgtttagaatcacatgttttgattcatatcatatga |
42184102 |
T |
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| Q |
416 |
gtttcatgaaatcaggttgccaatgtgattttgttgaaggcttaagcttcaaagtatagcttttgctaaaatctgtggttcttctaaatttatcatgaat |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42184103 |
gtttcatgaaatcaggttgccaatgtgattttgttgaaggcttaagcttctaagtatagcttttgctaaaatctgtgattcttctaaatttatcatgaat |
42184202 |
T |
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| Q |
516 |
ccaaacatgtactatgcctatg |
537 |
Q |
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| T |
42184203 |
ccaaacatgtactatgcctatg |
42184224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 11196794 - 11196902
Alignment:
| Q |
18 |
aagaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcatatgcatagaggtcgtccccgttcaagaaag |
117 |
Q |
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|||||||||||||||||||||||||||| |||| |||| |||| || | ||||||||| |||||||| | || ||||| ||||||||||||| |
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| T |
11196794 |
aagaacagatggtaaaaaatggagatgtgctagggatgctcatcctgattctaagtactgtgaccggcatatgattcgacgtcgttaccgttcaagaaag |
11196893 |
T |
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| Q |
118 |
cctgtggaa |
126 |
Q |
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| T |
11196894 |
cctgtggaa |
11196902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 7246602 - 7246546
Alignment:
| Q |
72 |
gtactgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagcctgtggaact |
128 |
Q |
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|||||||||||| || ||||| |||||| | |||||||||||||||||||||||| |
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| T |
7246602 |
gtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
7246546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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