View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13565_high_8 (Length: 485)
Name: NF13565_high_8
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_high_8 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 11445578 - 11445126
Alignment:
| Q |
19 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445578 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
11445479 |
T |
|
| Q |
119 |
catgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11445478 |
catgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcctctaagaaatggctcactgaggacaaggaactcagcct |
11445379 |
T |
|
| Q |
219 |
ctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445378 |
atttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattct |
11445279 |
T |
|
| Q |
319 |
caaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445278 |
caaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactca |
11445179 |
T |
|
| Q |
419 |
tccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445178 |
tccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11445126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 11547512 - 11547964
Alignment:
| Q |
19 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547512 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
11547611 |
T |
|
| Q |
119 |
catgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11547612 |
catgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcctctaagaaatggctcactgaggacaaggaactcagcct |
11547711 |
T |
|
| Q |
219 |
ctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547712 |
atttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattct |
11547811 |
T |
|
| Q |
319 |
caaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547812 |
caaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactca |
11547911 |
T |
|
| Q |
419 |
tccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547912 |
tccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11547964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 11507281 - 11507733
Alignment:
| Q |
19 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
118 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507281 |
ttctttgcgaaaacaacactgatgagtggcaaagaaggagaagaagaaacaatatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
11507380 |
T |
|
| Q |
119 |
catgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcct |
218 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| || || |
|
|
| T |
11507381 |
catgtttgtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatggtactcctctacgaaatggctcactgaggagaaggaactcagtct |
11507480 |
T |
|
| Q |
219 |
ctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507481 |
ctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattct |
11507580 |
T |
|
| Q |
319 |
caaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507581 |
caaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttgaagtctatagttgatgttggaggtggaagaggaggtttcacaaaactca |
11507680 |
T |
|
| Q |
419 |
tccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507681 |
tccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11507733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 59 - 471
Target Start/End: Complemental strand, 11468528 - 11468116
Alignment:
| Q |
59 |
aagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatg |
158 |
Q |
| |
|
||||||||||| | ||| ||||||| |||||||||| ||||||||| | ||| ||||||| ||||| ||||| |||||| ||| | ||||||||||| |
|
|
| T |
11468528 |
aagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatg |
11468429 |
T |
|
| Q |
159 |
tcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatctt |
258 |
Q |
| |
|
| |||| | |||||||||||||||||||||||| || | ||||| ||||| ||| || | ||| || |||| || |||||||||| ||| |||| |
|
|
| T |
11468428 |
ttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttctt |
11468329 |
T |
|
| Q |
259 |
aacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgt |
358 |
Q |
| |
|
||||||||| ||||||||||| |||| || ||||||||| ||| ||||| |||||||| ||||| || || |||||||| || || |||| ||||||| |
|
|
| T |
11468328 |
aacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagccatgtgt |
11468229 |
T |
|
| Q |
359 |
ttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttga |
458 |
Q |
| |
|
|||| |||||||| ||| | |||||||| | |||||| | |||| | | |||||||||| ||||||| ||||| || ||||||||||||| || || |
|
|
| T |
11468228 |
ttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagttttaga |
11468129 |
T |
|
| Q |
459 |
tcaaccacaggtt |
471 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11468128 |
tcaaccacaggtt |
11468116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 59 - 471
Target Start/End: Original strand, 11522933 - 11523345
Alignment:
| Q |
59 |
aagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatg |
158 |
Q |
| |
|
||||||||||| | ||| ||||||| |||||||||| ||||||||| | ||| ||||||| ||||| ||||| |||||| ||| | ||||||||||| |
|
|
| T |
11522933 |
aagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatg |
11523032 |
T |
|
| Q |
159 |
tcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatctt |
258 |
Q |
| |
|
| |||| | |||||||||||||||||||||||| || | ||||| ||||| ||| || | ||| || |||| || |||||||||| ||| |||| |
|
|
| T |
11523033 |
ttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttttaactttctt |
11523132 |
T |
|
| Q |
259 |
aacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgt |
358 |
Q |
| |
|
||||||||| ||||||||||| |||| || ||||||||| ||| ||||| |||||||| ||||| || || |||||||| || || |||| ||||||| |
|
|
| T |
11523133 |
aacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagccatgtgt |
11523232 |
T |
|
| Q |
359 |
ttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttga |
458 |
Q |
| |
|
|||| |||||||| ||| | |||||||| | |||||| | |||| | | |||||||||| ||||||| ||||| || ||||||||||||| || || |
|
|
| T |
11523233 |
ttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagttttaga |
11523332 |
T |
|
| Q |
459 |
tcaaccacaggtt |
471 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11523333 |
tcaaccacaggtt |
11523345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 57 - 471
Target Start/End: Original strand, 34775913 - 34776327
Alignment:
| Q |
57 |
agaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatcca |
156 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||| || || |||||| |||| ||||||||| |
|
|
| T |
34775913 |
agaagaagaaatagcatattctctcacacctccttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatcca |
34776012 |
T |
|
| Q |
157 |
tgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatc |
256 |
Q |
| |
|
|| | | |||||||| ||||| ||||||||| ||| ||| || ||||||| | | |||||| | |||| ||| |||| |||||||| | || |
|
|
| T |
34776013 |
agttctttagacatgtggagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttc |
34776112 |
T |
|
| Q |
257 |
ttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgt |
356 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||||| |||||||| |||||||| ||| || || |||| ||| ||||| || | || |
|
|
| T |
34776113 |
ttaacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaataaacgcgt |
34776212 |
T |
|
| Q |
357 |
gtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtattt |
456 |
Q |
| |
|
|| || |||||||||||| | ||||||||||||||||| | || ||| | ||||||||||| |||||| ||||||| |||| ||||| || || ||| |
|
|
| T |
34776213 |
tttcgagggtttggagtctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgttttt |
34776312 |
T |
|
| Q |
457 |
gatcaaccacaggtt |
471 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34776313 |
gatcaaccacaggtt |
34776327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 471
Target Start/End: Original strand, 34784125 - 34784539
Alignment:
| Q |
57 |
agaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatcca |
156 |
Q |
| |
|
||||||||||||| ||||| ||| || || |||||| ||||||||||||||| ||||| |||||||| ||| | || || |||| ||||||| || |
|
|
| T |
34784125 |
agaagaagaaacagcatatggtcttacaccatcttcaaagcttctcataagtggaaaatcgacatgtttatcaacgcttattgaaggagcgcttcatgca |
34784224 |
T |
|
| Q |
157 |
tgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatc |
256 |
Q |
| |
|
|| | | |||||||| | || || ||||||||| ||| |||||| ||||||| | || |||||| | |||| |||||||| | |||||| | || |
|
|
| T |
34784225 |
agttctatagacatgtggaagtcttcaaagaaatggttcaatgaggataaggaacaaactctttttgagtgtgcaacaggagagaactattgggattttc |
34784324 |
T |
|
| Q |
257 |
ttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgt |
356 |
Q |
| |
|
||||||||||| ||||||||| | ||||| |||||||||| |||||||||||||||||| ||| || || |||||||| | ||| ||| |||| |
|
|
| T |
34784325 |
ttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgt |
34784424 |
T |
|
| Q |
357 |
gtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtattt |
456 |
Q |
| |
|
|||||| |||||||| ||| | |||||||| | ||||||| || | | ||||||| || || |||||||| |||||| | |||||||||| || ||| |
|
|
| T |
34784425 |
gtttgagggtttggaatctcttgttgatgtcgcgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgttttt |
34784524 |
T |
|
| Q |
457 |
gatcaaccacaggtt |
471 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34784525 |
gatcaaccacaggtt |
34784539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 1938 - 2390
Alignment:
| Q |
19 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
118 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1938 |
ttctttgcgaaaacaacactgatgagtggcaaagaaggagaagaagaaacaatatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
2037 |
T |
|
| Q |
119 |
catgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcct |
218 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| || || |
|
|
| T |
2038 |
catgtttgtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatggtactcctctacgaaatggctcactgaggagaaggaactcagtct |
2137 |
T |
|
| Q |
219 |
ctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2138 |
ctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattct |
2237 |
T |
|
| Q |
319 |
caaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2238 |
caaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggggtctatagttgatgttggaggtggaagaggaggtttcacaaaactca |
2337 |
T |
|
| Q |
419 |
tccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338 |
tccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
2390 |
T |
|
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