View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_11 (Length: 478)
Name: NF13565_low_11
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 47 - 455
Target Start/End: Original strand, 45709988 - 45710398
Alignment:
| Q |
47 |
aaacacacaagttaagcaagataggaccatcaagagtttaattactatacattaacgatataaagttgtcatatttattaattgacgcactaacatatca |
146 |
Q |
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| T |
45709988 |
aaacacacaagttaagcaagataggaccatcaagagtttaattactatacattaacgatataaagttgtcatatttattaattgacgcactaacatatca |
45710087 |
T |
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| Q |
147 |
ttgagtacatgcataaaataattgtatattgacaatgcatactaattaaattcatatatcaaactttgcagattttgattatnnnnnnntaattgcagca |
246 |
Q |
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| T |
45710088 |
ttgagtacatgcataaaataattgtatattgacaatgcatactaattaaattcatatatcaaactttgcagattttgataataaaaaaataattgcagca |
45710187 |
T |
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| Q |
247 |
gaaatataactgcggccacaactatattctcatg--nnnnnnnnttattacgaaaacaaatatttgaaagaatgactgttaggttaggtaggacctacaa |
344 |
Q |
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| T |
45710188 |
gaaatataactgcggccacaactatattctcatgaaaaaaaaaaatattacgaaagcaaatatatgaaagaatgactgttaggttaggtaggacctacaa |
45710287 |
T |
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| Q |
345 |
ggaggccaaagttgaagccaacgatgacggtattggcgatggaaatggaagcgagttgaacgtcgccaaggtgaccggcaaaggcttgagtaacgacgtt |
444 |
Q |
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| T |
45710288 |
ggaggccaaaattgaagccaacgatgacggtattggcgatggaaatggaagcgagttgaacgtcaccaaggtgaccggcaaaggcttgagtaacgacgtt |
45710387 |
T |
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| Q |
445 |
catggtgaaag |
455 |
Q |
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| T |
45710388 |
catggtgaaag |
45710398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 45709953 - 45709985
Alignment:
| Q |
22 |
caactagctccatcataaaaaccacaaacacac |
54 |
Q |
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| T |
45709953 |
caactagctccatcataaaaaccacaaacacac |
45709985 |
T |
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