View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_20 (Length: 373)
Name: NF13565_low_20
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 26538091 - 26538426
Alignment:
| Q |
16 |
atgcttccggtctacaatgcctttagatgatgttgtcattgttaaggtaatttataaagcaagtctgcggcagtttgtttattatagatcatatttcggt |
115 |
Q |
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| T |
26538091 |
atgcttccggtctacaatgcctttagatgatgttgtcattgttaaggtaatttataaagcaagtctgaggcagtttgtttattatagaccatatttcagt |
26538190 |
T |
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| Q |
116 |
ctgaaagacttgaagctcattcattttgtcaattacacccaaacaccattttgttaatatatgatgaaaatgagtttgcattcaagcatgaaaagtcaca |
215 |
Q |
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| T |
26538191 |
ctgaaagacttgaagttcattcattttgtcaattacacccaaacaccattttgttaatatatgatgaatatgagtttgcattcaagcatggaaagtcaca |
26538290 |
T |
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| Q |
216 |
attaaatggtaaggactctcaggaaataaatttttgtttgatgagaagtttgagaacctagtggactcaaacatacaaaacctgagatttaggaactaac |
315 |
Q |
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| T |
26538291 |
attaaatggtaaggactctctggaaataaattgttctttgctcggaagtttgagaacctagtagactcaaacatacaaaacctgagatttaggaactaac |
26538390 |
T |
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| Q |
316 |
aaatgcttagttagatgcatttgttgcagcagaagg |
351 |
Q |
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| T |
26538391 |
aaatgcttagttagatgcatttgttgcagcagaagg |
26538426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 741879 - 741826
Alignment:
| Q |
297 |
ctgagatttaggaactaacaaatgcttagttagatgcatttgttgcagcagaag |
350 |
Q |
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| T |
741879 |
ctgagatttaggaacaaacaaatgccaagttacatgcatttgttgcagcagaag |
741826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 752315 - 752262
Alignment:
| Q |
297 |
ctgagatttaggaactaacaaatgcttagttagatgcatttgttgcagcagaag |
350 |
Q |
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| T |
752315 |
ctgagatttaggaacaaacaaatgccaagttacatgcatttgttgcagcagaag |
752262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 5974796 - 5975132
Alignment:
| Q |
16 |
atgcttccggtctacaatgcctttagatgatgttgtcattgttaaggtaatttataaagcaagtctgcggcagtttgtttattata----gatcatattt |
111 |
Q |
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| T |
5974796 |
atgcttccagtctacaatgcctttagatgatgatgccattgttaaggtaatttataaagcaagtctgagtcattttgtt-attatattgggaccatattt |
5974894 |
T |
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| Q |
112 |
cggtctgaaagacttgaagctcattcattttgtcaattacacccaaacaccattttgttaatatatgatgaaaatgagtttgcattcaagcatgaaaagt |
211 |
Q |
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| T |
5974895 |
caatctgaaatacttgaagctcattcattttgtcaatcacacccaaacaccattttgttaatatataatgaaaacgagtttgcattcaagcatgaa--gt |
5974992 |
T |
|
| Q |
212 |
cacaattaaatggtaaggactctcaggaaataaatttttgtttgatgagaagtttgagaacctagtggactcaaacatacaaaacctgagatttaggaac |
311 |
Q |
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| T |
5974993 |
cacaattaaatggcaaggactgttaggaaataaattgttgtttgctgagaagtttgagaacctagcagactgaaacatacagaacctgatatttagaaac |
5975092 |
T |
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| Q |
312 |
taacaaatgcttagttagatgcatttgttgcagcagaagg |
351 |
Q |
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| T |
5975093 |
taacaaatgcttagttagatgcatttgttgcagcagaagg |
5975132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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