View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_22 (Length: 367)
Name: NF13565_low_22
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 52590330 - 52590672
Alignment:
| Q |
11 |
catcatcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactctccacagttgtaaagtt |
110 |
Q |
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| T |
52590330 |
catcgtcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggccaccactctccacagttgtaaagtt |
52590429 |
T |
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| Q |
111 |
acccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttaccatgcaattttccattt |
210 |
Q |
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| T |
52590430 |
acccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcctttggttaccatgcaattttccattt |
52590529 |
T |
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| Q |
211 |
ccacaatctatcacannnnnnnctacatgttctctagtggaagaggcttgttgtacactatgatcactagcaataatctgtacattgtctcgtgactctt |
310 |
Q |
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| T |
52590530 |
ccacaatctatcacatttttttctacatgttttctagtggaagaggctttttgtacactatgatcactatcaataatttgtacattgtcttgtgactctt |
52590629 |
T |
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| Q |
311 |
cttccaatttataattaccttggagtgtatttccagatgaaaa |
353 |
Q |
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| T |
52590630 |
cttccaatttattattaccttggagtgtatttccagatgaaaa |
52590672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 7301210 - 7301255
Alignment:
| Q |
31 |
aatccatcgctttcacagtttctcaactccaatgcaagagagacat |
76 |
Q |
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| T |
7301210 |
aatccatcactttcagagttcctcaactccaatgcaagtgagacat |
7301255 |
T |
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