View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_23 (Length: 366)
Name: NF13565_low_23
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 3702685 - 3702408
Alignment:
| Q |
18 |
aatgaatatctggcaaacattcaaaaccacttggggcttgccttgagcaaaaattgataagctgagtaaatgaaattggaatgtttattattatgcccat |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
3702685 |
aatgaatatctggcaaacattcaaaaccgcttggggcttgccttgagcaaaaattgataagctgagtaaatgaaattggaatgtttactattatacccat |
3702586 |
T |
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| Q |
118 |
aatgtttgcttttagagccgtacaaatgcaaattgcaaagtcatagtcaactaaaccgtcaaggaaaccgcaacattgggcatttggaacacccatagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3702585 |
aatgtttgcttttagagccgtacaaatgcaaattgcaaagtcatagtcaactaaaccgtcaaggaaaccgcaacattggccatttggaacacccatagaa |
3702486 |
T |
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| Q |
218 |
aagttgaacatcccatttaacacactggagcatccaccaagtttgattgtgtcacgcggacaagatttgcgtgaaggt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702485 |
aagttgaacatcccatttaacacactggagcatccaccaagtttgattgtgtcacgcggacaagatttgcgtgaaggt |
3702408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 3683922 - 3683645
Alignment:
| Q |
18 |
aatgaatatctggcaaacattcaaaaccacttggggcttgccttgagcaaaaattgataagctgagtaaatgaaattggaatgtttattattatgcccat |
117 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
3683922 |
aatgaacatctggcaaacattcaaaaccgcttggggcttgccttgagcaaaaattgataagctgggtaaatgaaattggaatgtttactattatgcccat |
3683823 |
T |
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| Q |
118 |
aatgtttgcttttagagccgtacaaatgcaaattgcaaagtcatagtcaactaaaccgtcaaggaaaccgcaacattgggcatttggaacacccatagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3683822 |
aatgtttgcttttagagccgtacaaatgcaaattgcaaagtcatagtcaactaaaccgtcaaggaaaccgcaacattggctatttggaacacccatagaa |
3683723 |
T |
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| Q |
218 |
aagttgaacatcccatttaacacactggagcatccaccaagtttgattgtgtcacgcggacaagatttgcgtgaaggt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3683722 |
aagttgaacatcccatttaacacactggagcatccaccaagtttgattgtgtcacgcggacaagatttgcgtgaaggt |
3683645 |
T |
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