View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_25 (Length: 359)
Name: NF13565_low_25
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 51826989 - 51827157
Alignment:
| Q |
12 |
agagatgaagctgaaaaggaaaccgtgcagaaagaatgaaaaataatgag---tataaaaaattgaggcagattggcctattgtcacggtaagatagatc |
108 |
Q |
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| T |
51826989 |
agagatgaagttgaaaaggaaaccgtgcagaaagaatgaaaaataatgaggagtataaaaaattgaggcagattggcctattgtcacggtaagatagatt |
51827088 |
T |
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| Q |
109 |
actcaaggaaaaaacgctattgtgaatacaatttatgattagagatcaaattcatacttatggaaatag |
177 |
Q |
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| T |
51827089 |
actcaaggaaaaaacgctattgtgaatacaatttatgattagagatcaaattcatactaatggaaatag |
51827157 |
T |
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Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 51827264 - 51827343
Alignment:
| Q |
264 |
ttgaatttaagaatgacaaaaattagttacaggaatatttcaaatcataattacaaccttagctaatagaactaagttag |
343 |
Q |
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| T |
51827264 |
ttgaatttaagaatgacaaaaattaattacaggaataattcaaatcataattacaactttagctaatagaactaagttag |
51827343 |
T |
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