View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_26 (Length: 352)
Name: NF13565_low_26
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 34872390 - 34872055
Alignment:
| Q |
1 |
ggtgatttttaatgcagggaccagccaaattatgggagaacgcactgttgagcctcgaggttgcaggcaacgaacctggaatagatggagaggagattgc |
100 |
Q |
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| T |
34872390 |
ggtgatttttaatgcagggaccagccaaactatgggagaacgcactgttgagcctcgaggtcgcaggcaacgaacctggaatagatggagaggagattgc |
34872291 |
T |
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| Q |
101 |
tccacttgcaaaggaaaatgtggccactccatgagcatcaatagggatatatatcgtcatttttagatacggtcattaataaaaatcgttatctaaagtg |
200 |
Q |
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| T |
34872290 |
tccacttgcaaaggaaaatgtggccactccatgagcatcaatagggatatatatcgtcatttt-agatacggtcattaataaaaatcgttatctaaagtg |
34872192 |
T |
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| Q |
201 |
cattagcacaattgcagtaagattgtaggcgtagccgcaagctcgtaaatcgtagttgatgaatgagttctaacgaaggaacctaatcgttctaccacga |
300 |
Q |
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| T |
34872191 |
cattagcacaagtgcagtaagactgtaggcgtagccgcaagctcgtaaatcgtagttgatgaatgagttctaacgaaggaacctaatcgttctaccacga |
34872092 |
T |
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| Q |
301 |
aacttagttgaaggtcctttttaagcaacatatatat |
337 |
Q |
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| T |
34872091 |
aacttagttgaaggtcctttttaagcaacatatatat |
34872055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 8938049 - 8938111
Alignment:
| Q |
72 |
gaacctggaatagatggagaggagattgctccacttgcaaaggaaaatgtggccactccatga |
134 |
Q |
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| T |
8938049 |
gaacctggaattgatggagaagaaattgctccacaggcaaaggaaaatgtggcaactccatga |
8938111 |
T |
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