View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13565_low_27 (Length: 346)

Name: NF13565_low_27
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13565_low_27
NF13565_low_27
[»] chr6 (4 HSPs)
chr6 (16-161)||(7326151-7326296)
chr6 (242-314)||(7326481-7326553)
chr6 (177-242)||(7326393-7326453)
chr6 (184-227)||(6922703-6922746)
[»] chr4 (5 HSPs)
chr4 (163-227)||(35130658-35130723)
chr4 (177-227)||(13538317-13538367)
chr4 (185-226)||(49479453-49479494)
chr4 (163-227)||(17882291-17882355)
chr4 (164-227)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (184-228)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (163-227)||(30746010-30746074)
chr7 (177-227)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (184-228)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (184-224)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (163-229)||(32594558-32594625)
chr3 (184-227)||(52093594-52093637)
chr3 (184-227)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (194-228)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 7326151 - 7326296
Alignment:
Q  16 attgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcataatctaaaatgttgtttgctgcaaataagtgaaattagcttcat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  7326151 attgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcctaatctaaaatgttgtttgctgcaaataagtgaagttagcttcat 7326250  T
Q  116 ttcataccgaaaaatcaagcacattgacaacgcaagctattagcac 161  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  7326251 ttcataccgaaaaatcaagcacattgacaacgcaagctattggcac 7326296  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 7326481 - 7326553
Alignment:
Q  242 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggatagttttatcccttcatgtcagt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7326481 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggataattttatcccttcatgtcagt 7326553  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 7326393 - 7326453
Alignment:
Q  177 ccctactcaaattattcctgatagctaccaactgaactatacttacgggacacacttatttcttca 242  Q
    |||| |||||||||| |||| ||||||||||||||     ||||||||||||||||||||||||||    
T  7326393 ccctgctcaaattatccctggtagctaccaactga-----acttacgggacacacttatttcttca 7326453  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 6922703 - 6922746
Alignment:
Q  184 caaattattcctgatagctaccaactgaactatacttacgggac 227  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  6922703 caaattattcatggtagctaccaactgaactacacttacgggac 6922746  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 35130658 - 35130723
Alignment:
Q  163 ggttcgaaccccggccc-tactcaaattattcctgatagctaccaactgaactatacttacgggac 227  Q
    ||||||||||||||||| | | ||||||||  ||| |||||||||||||||||| |||||||||||    
T  35130658 ggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacgggac 35130723  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 13538317 - 13538367
Alignment:
Q  177 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 227  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  13538317 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 13538367  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 49479494 - 49479453
Alignment:
Q  185 aaattattcctgatagctaccaactgaactatacttacggga 226  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  49479494 aaattatttctgatagctaccaactgaactacacttatggga 49479453  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 17882291 - 17882355
Alignment:
Q  163 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 227  Q
    ||||||||||| | |||| | |||||||| | ||| |||||| |||||||||| |||||||||||    
T  17882291 ggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactacacttacgggac 17882355  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 35010431 - 35010495
Alignment:
Q  164 gttcgaaccccggc-cctactcaaattattcctgatagctaccaactgaactatacttacgggac 227  Q
    |||||||||||| | ||| | ||||||||  |||||||||||||||||| ||| |||||||||||    
T  35010431 gttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgggac 35010495  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 35896 - 35852
Alignment:
Q  184 caaattattcctgatagctaccaactgaactatacttacgggaca 228  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  35896 caaattatctctgatagctaccaactgaactatacttacgagaca 35852  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 30746010 - 30746074
Alignment:
Q  163 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 227  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||||||  |||||||| |||||    
T  30746010 ggttcaaaccccgcccctgcacaaattattcctgatagttaccaactgagttatacttatgggac 30746074  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 9667293 - 9667343
Alignment:
Q  177 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 227  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  9667293 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 9667343  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 24793513 - 24793469
Alignment:
Q  184 caaattattcctgatagctaccaactgaactatacttacgggaca 228  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  24793513 caaattatctctgatagctaccaactgaactatacttacgagaca 24793469  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 29097928 - 29097888
Alignment:
Q  184 caaattattcctgatagctaccaactgaactatacttacgg 224  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29097928 caaattattcctgatagttaccaactgaactacacttacgg 29097888  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 32594625 - 32594558
Alignment:
Q  163 ggttcgaaccccggcc-ctactcaaattattcctgatagctaccaactgaactatacttacgggacac 229  Q
    ||||||||||||| || |||| ||||||||||||  || ||||||||||||||| |||||||| ||||    
T  32594625 ggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaacac 32594558  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 52093637 - 52093594
Alignment:
Q  184 caaattattcctgatagctaccaactgaactatacttacgggac 227  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093637 caaattatccctgatagctaccaactgagccatacttacgggac 52093594  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 52093792 - 52093749
Alignment:
Q  184 caaattattcctgatagctaccaactgaactatacttacgggac 227  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093792 caaattatccctgatagctaccaactgagccatacttacgggac 52093749  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 2276308 - 2276274
Alignment:
Q  194 ctgatagctaccaactgaactatacttacgggaca 228  Q
    |||||||||||||||||||||||||||||| ||||    
T  2276308 ctgatagctaccaactgaactatacttacgagaca 2276274  T

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