View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_28 (Length: 330)
Name: NF13565_low_28
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 5470788 - 5470488
Alignment:
| Q |
1 |
cacagacaaaccattcttcactcttcacaaactcacatactctccacnnnnnnnnnnnnntcatcaacaagaacaaacnnnnnnnntgaaaccattgata |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||||| |
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| T |
5470788 |
cacatacaaaccattcttcactcttcacaaactcacatactctccaccacacac------tcatcaacaagaacaaacaaaaaacatgaaatcaatgata |
5470695 |
T |
|
| Q |
101 |
aacttcaaaaccataatcatcaccttcttatacttttccacctccctcttacaccttcatgcctatgacccaattgaccgttttaacctcaattgtggca |
200 |
Q |
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||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5470694 |
aactttaaaaccataatcatcaccctcttatacttttccatctccctcttacaccttcatgcctacgacccaattgaccgttttaacctcaattgtggca |
5470595 |
T |
|
| Q |
201 |
cctcaggaaactctaccgacggacaaagaacatggacaggagacataaactcaaaacttttgtcatcattacaaaacaatccaacaacagtttctgttcc |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
5470594 |
caacaggaaactctaccgacggacaaagaacatggacaggagacataaactcaaaacttttgtcatcatcacaaaacaatccaacaacaatttctgttcc |
5470495 |
T |
|
| Q |
301 |
aaaaaca |
307 |
Q |
| |
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||||||| |
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| T |
5470494 |
aaaaaca |
5470488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 5476143 - 5476441
Alignment:
| Q |
1 |
cacagacaaaccattcttcactcttcacaaactcacatactctccacnnnnnnnnnnnnntcatcaacaagaacaaacnnnnnnnntgaaaccattgata |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
5476143 |
cacaaacaaaccattcttcactcttcacaaactcacatactctccaccacacac------tcatcaacaagaacaaacaaaaca--tgaaaccattgatt |
5476234 |
T |
|
| Q |
101 |
aacttcaaaaccataatcatcaccttcttatacttttccacctccctcttacaccttcatgcctatgacccaattgaccgttttaacctcaattgtggca |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| || |||||||||||||| | |||| | ||| ||||||| |
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| T |
5476235 |
aacttcaaaaccataatcatcaccctcttatacttttccatctccctcgtacaccttcaagcttatgacccaattgaacactttaccgtcagttgtggcg |
5476334 |
T |
|
| Q |
201 |
cctcaggaaactctaccgacggacaaagaacatggacaggagacataaactcaaaacttttgtcatcattacaaaacaatccaacaacagtttctgttcc |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5476335 |
caacaggaaactctaccgacggacaaagaacatggacaggagacataaactcaaaacttttgtcatcattacaaaacaatccaacaacaatttctgttcc |
5476434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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