View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_3 (Length: 627)
Name: NF13565_low_3
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 354 - 611
Target Start/End: Original strand, 21073242 - 21073499
Alignment:
| Q |
354 |
caatttgtttgcagaaatgatttggtgatttgcattgataattacaccactttagggatgatgtcgtgataaatgtagttataatttctattttgttgca |
453 |
Q |
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| T |
21073242 |
caatttgtttgcagaaataatttggtgatttgcattgataatcacaccactttagggatgatgtcgtgataaatgtagttataatttctattttgttgca |
21073341 |
T |
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| Q |
454 |
gaaatcaattctgccgtcttcaggaagtgatgatcgtcaacactgtcaccgttcagaacggccgtccccggattcaactcaccgtgaagttgaaccaccg |
553 |
Q |
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| T |
21073342 |
gaaatcaattctgccgtcttcaggaagtgatgatcatcaacactgtcaccgttcagaacggccgtccccggattcaactcaccgtgaagttgaaccaccg |
21073441 |
T |
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| Q |
554 |
cgtccgaccaaaagaaaatcagatcaccactctgaacctgaacacgatggcatagctg |
611 |
Q |
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| T |
21073442 |
cgtccgaccaaaagaaaatcagatcaccactctgaacctgaacacgatggcatagctg |
21073499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 21072891 - 21073180
Alignment:
| Q |
7 |
tccaagaatatcatttcatctcaacaagtgtaatttctttgattaatcaggttagaaaaaacttctatctttcnnnnnnnnnn----tcattatataaat |
102 |
Q |
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| T |
21072891 |
tccaaaaatatcatttcatctcaacaagtgtaatttctttgattaatcaggttagaaaaaacttctatctttcaaaaaaaaaaaaaatcattatataaat |
21072990 |
T |
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| Q |
103 |
aaatatgtatttatttttgtgtcatatgctggaatcaatatttaattgtctttcatgcttctgttaataaagctaagaacatatatgggatgcaggtttc |
202 |
Q |
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| T |
21072991 |
aaatatgtattgatttttgtgtcatatgctggactcaatattttatggtctttcatgcttctattaataaagctaagaacatatatgggatgcagatttc |
21073090 |
T |
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| Q |
203 |
caagactaaaacgacaggtagattactgccttgctcaaagtgacatgtaaatatcaatttcatgaagagcgagacattatgcaggttagc |
292 |
Q |
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| T |
21073091 |
caagactaaaacgagaggcatattactgccttgctcaaagtgacatgtaaatatccatttcatgaagagcgagacattatgcaggttagc |
21073180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 445 - 580
Target Start/End: Original strand, 41569050 - 41569185
Alignment:
| Q |
445 |
tttgttgcagaaatcaattctgccgtcttcaggaagtgatgatcgtcaacactgtcaccgttcagaacggccgtccccggattcaactcaccgtgaagtt |
544 |
Q |
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| T |
41569050 |
tttgttgcagaaaccaattccaccgtcttcagcaagcgattatcatcaaaaccgtcaccgttcagaacggccatcgccagattcatcccaccgtgaagtt |
41569149 |
T |
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| Q |
545 |
gaaccaccgcgtccgaccaaaagaaaatcagatcac |
580 |
Q |
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| T |
41569150 |
gaaccaccgcgtccaaccaaaagaaaatcagatcac |
41569185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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