View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_30 (Length: 316)
Name: NF13565_low_30
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 49158259 - 49158468
Alignment:
| Q |
12 |
aagaatataaaaacaaaa--attatttcacagcgtaaaaacaaaccctaaattttccacctcccctcctccacaattcactccttcactttcaggcagta |
109 |
Q |
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| T |
49158259 |
aagaaaataaaaacaaaaaaattatttcgcagcgtaaaaacaaaccctaaattttccacctcccctcctccacaattcactcctttactttcaggcagta |
49158358 |
T |
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| Q |
110 |
cataaaccaccaaattcaattgttcgaaacagcccaatgcatgtaag-aaaaaatggttcaatcgaacaacaaaatccgccaccaaaaaacccctattcc |
208 |
Q |
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| T |
49158359 |
cataaaccaccaaattcaattgttcgaaacagcccaatgcatgtaagaaaaaaatggttcaatcgaacaacaaaatccgccaccaaaaaacccctattcc |
49158458 |
T |
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| Q |
209 |
aacaactaca |
218 |
Q |
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|||||||||| |
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| T |
49158459 |
aacaactaca |
49158468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 49158526 - 49158566
Alignment:
| Q |
276 |
cattttacaatctaattcacatcatcatcaaaagggtcaac |
316 |
Q |
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| T |
49158526 |
cattttacaatctaattcacatcatcatcaaaagggtcaac |
49158566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 2866524 - 2866350
Alignment:
| Q |
50 |
caaaccctaaattttccacctcccctcctccacaattcactccttcactttcaggcagtacataaaccaccaaattcaattgttcgaaacagc------- |
142 |
Q |
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| T |
2866524 |
caaaccctaaattttccagctcccctcctccgcaattcattcctttactttcaagcagcacataaaccaccaaattcaattattcgaaacagcccaacac |
2866425 |
T |
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| Q |
143 |
ccaatgcatgtaagaaaaaatggttcaatcgaacaacaaaatccgccaccaaaaaacccctattccaacaactaca |
218 |
Q |
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|||| |||||| |||||||||| || ||||||||||||||| ||||||| |||||| ||||| |||||| |||||| |
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| T |
2866424 |
ccaacgcatgttagaaaaaatgctttaatcgaacaacaaaaaccgccactaaaaaa-ccctaatccaactactaca |
2866350 |
T |
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