View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13565_low_33 (Length: 261)

Name: NF13565_low_33
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13565_low_33
NF13565_low_33
[»] chr4 (2 HSPs)
chr4 (16-245)||(11016681-11016910)
chr4 (105-139)||(12068027-12068061)
[»] chr7 (2 HSPs)
chr7 (16-79)||(19112588-19112651)
chr7 (16-66)||(47609149-47609199)
[»] chr3 (4 HSPs)
chr3 (16-70)||(36903639-36903693)
chr3 (19-79)||(19155046-19155106)
chr3 (16-70)||(20909234-20909287)
chr3 (107-141)||(26786131-26786165)
[»] chr5 (1 HSPs)
chr5 (16-70)||(13876791-13876845)
[»] chr2 (2 HSPs)
chr2 (25-79)||(33765044-33765098)
chr2 (110-139)||(15953967-15953996)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 11016910 - 11016681
Alignment:
Q  16 atcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttgatccaaacactcacataatcttttaaaaaatccattt 115  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  11016910 atcacgttcaaaaatcacatcaaagcaaaagctaatatttgtagcttcataattttcaagttgatccaa-cactcacataatcttttaaaaaatctattt 11016812  T
Q  116 ggattggtctgatggtgttgacttagaacacctgatgatctcatctttgattctcctcggtaccatt-ttttctggactagtttaacttcttaatnnnnn 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||         
T  11016811 ggattggtctgatggtgttgacttagaacacctgatgatctcatctttgattctcctcgataccatttttttttggactagtttaacttcttaataaaga 11016712  T
Q  215 nncttaaataatctttaaccagaattcactt 245  Q
      |||||||||||||||||||||||||||||    
T  11016711 aacttaaataatctttaaccagaattcactt 11016681  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 12068027 - 12068061
Alignment:
Q  105 aaaatccatttggattggtctgatggtgttgactt 139  Q
    |||||||||||||||||||||||| ||||||||||    
T  12068027 aaaatccatttggattggtctgatcgtgttgactt 12068061  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 19112651 - 19112588
Alignment:
Q  16 atcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttga 79  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  19112651 atcacgttaaaaaatcacatcaaagcaaaagctcatatttgtagcttcataatttccaagttga 19112588  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 47609199 - 47609149
Alignment:
Q  16 atcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcata 66  Q
    |||||||| |||| |||||||||||||||||||| || |||||||||||||    
T  47609199 atcacgttaaaaattcacatcaaagcaaaagcttgtatttgtagcttcata 47609149  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 36903639 - 36903693
Alignment:
Q  16 atcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattt 70  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  36903639 atcacgttagaaaatcacatcaaagcaaaagcttatatttgtagcttcataattt 36903693  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 19155046 - 19155106
Alignment:
Q  19 acgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttga 79  Q
    ||||| |||| |||||||||||||||||||||||||| |||||||||| ||| || |||||    
T  19155046 acgttaaaaattcacatcaaagcaaaagcttataattatagcttcatagtttccacgttga 19155106  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 20909287 - 20909234
Alignment:
Q  16 atcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattt 70  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||    
T  20909287 atcacgttaaaaaatcacatcaaaggaaaagcttatatttgtagc-tcataattt 20909234  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 26786165 - 26786131
Alignment:
Q  107 aatccatttggattggtctgatggtgttgacttag 141  Q
    ||||||||||||||||||||||||| |||||||||    
T  26786165 aatccatttggattggtctgatggtattgacttag 26786131  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 13876791 - 13876845
Alignment:
Q  16 atcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattt 70  Q
    |||||||| |||||||| || |||||||||||||||| ||||| |||||||||||    
T  13876791 atcacgttaaaaaatcatataaaagcaaaagcttatatttgtaacttcataattt 13876845  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 33765044 - 33765098
Alignment:
Q  25 aaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttga 79  Q
    |||| ||||||||||||||||||| | | ||||||||||||| |||||| |||||    
T  33765044 aaaattcacatcaaagcaaaagctcagatttgtagcttcatagttttcacgttga 33765098  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 15953967 - 15953996
Alignment:
Q  110 ccatttggattggtctgatggtgttgactt 139  Q
    ||||||||||||||||||||||||||||||    
T  15953967 ccatttggattggtctgatggtgttgactt 15953996  T

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