View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_35 (Length: 239)
Name: NF13565_low_35
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 48749108 - 48749328
Alignment:
| Q |
19 |
cactcatcatggcactcaccaattccttacctttttggaggcttagcagccatgttaggtctcatagcttttgcactgttaattttagcttgttcttatt |
118 |
Q |
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| T |
48749108 |
cactcatcatggcactcaccaattccttacctttttggaggcttagcagccatgttaggtctcatagcttttgcactgttaattttagcttgttcttatt |
48749207 |
T |
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| Q |
119 |
ggagactcactggtcaattactagacgaagaaaataacagcaacaacagaaacatggagaatgaaaaagaaggtgaaaattcaaacaaagaatctgtgaa |
218 |
Q |
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| T |
48749208 |
ggagactcactggtcaattactagacgaagaaaataacagcaacaacagaaacatggagaatgaaaaagaaggtgaaaattcaaacaaagaatctgtgaa |
48749307 |
T |
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| Q |
219 |
agtttatgaagagaaagttct |
239 |
Q |
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| T |
48749308 |
agtttatgaagagaaagttct |
48749328 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 53701454 - 53701350
Alignment:
| Q |
17 |
cacactcatcatggcactcaccaattccttacctttttggaggcttagcagccatgttaggtctcatagcttttgcactgttaattttagcttgttctta |
116 |
Q |
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|||||||| ||||||| |||||| |||| ||| | || || || |||||||||||||||||| | ||||||||||| || ||||| | || |||||||| |
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| T |
53701454 |
cacactcaccatggcattcaccagttccatacttgttcggtggtttagcagccatgttaggtttaatagcttttgctctattaatccttgcatgttctta |
53701355 |
T |
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| Q |
117 |
ttgga |
121 |
Q |
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||||| |
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| T |
53701354 |
ttgga |
53701350 |
T |
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