View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_4 (Length: 627)
Name: NF13565_low_4
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 48 - 614
Target Start/End: Original strand, 180714 - 181280
Alignment:
| Q |
48 |
actctgctctttccttggccatattgctaagtaatgtcctccgctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggct |
147 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
180714 |
actctgctctttccttggccatattgctaagtaatgtcctccgctgcggcaacgcaacaatcaaccaatggcaaatttcgcttctacttcacattcggct |
180813 |
T |
|
| Q |
148 |
gctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttc |
247 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180814 |
gctcctaactgggtgttcgacactagagccagtcatcatataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttc |
180913 |
T |
|
| Q |
248 |
agattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtccc |
347 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
180914 |
agattggtgatggtacaggtttgaatatttcacatgttggctctattaccctccctaccccaaatattactttcaaattaaataatgtgctttgtgtccc |
181013 |
T |
|
| Q |
348 |
aaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtc |
447 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
181014 |
aaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtc |
181113 |
T |
|
| Q |
448 |
acgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctg |
547 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
181114 |
acgggggtgacgttgatgcgcggttccagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctg |
181213 |
T |
|
| Q |
548 |
cctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactgatgatgtc |
614 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
181214 |
cctcaccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
181280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 48 - 614
Target Start/End: Original strand, 1701141 - 1701707
Alignment:
| Q |
48 |
actctgctctttccttggccatattgctaagtaatgtcctccgctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggct |
147 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| ||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
1701141 |
actctgctctttgcttggccatattgctaagtattgtcctcagctgctacaacgcaacaatcaaccagtggcaaatttcgcttctgcttcacattcggct |
1701240 |
T |
|
| Q |
148 |
gctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttc |
247 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
1701241 |
gctcctaactgggtgttcgacacaggagccagtcatcatataacatcaaatctgaacaatatgcagctgcactccgaatatgacggtccagaagaagttc |
1701340 |
T |
|
| Q |
248 |
agattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtccc |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
1701341 |
agattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatactactttcaaattaaataatgtgctttgtgtccc |
1701440 |
T |
|
| Q |
348 |
aaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtc |
447 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1701441 |
aaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtc |
1701540 |
T |
|
| Q |
448 |
acgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctg |
547 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| | |
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| T |
1701541 |
acgggggcgacgttgatgcgcggttcaagtaacagtgatctctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccg |
1701640 |
T |
|
| Q |
548 |
cctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactgatgatgtc |
614 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
1701641 |
cctccccttctttatggcatgctcgtttcggtcatccctctttcagagttcttgcacaaatgatgtc |
1701707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 149 - 287
Target Start/End: Complemental strand, 26593191 - 26593053
Alignment:
| Q |
149 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
248 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| |||| ||| | |||||||||| |||||||| ||||||| ||||||||||| || |||||||| || |
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|
| T |
26593191 |
ctcctaattgggtgtttgatactggggccagccatcatatcagcacaaatctgaataatatgcacattcactctgaatatgatggcccagaagaagtgca |
26593092 |
T |
|
| Q |
249 |
gattggtgatggtacaggtttgaaaatttcacatgttgg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
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| T |
26593091 |
aattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 5399981 - 5400124
Alignment:
| Q |
149 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || ||||||||||||||||| |||||||| |
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| T |
5399981 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtcccgaggaagttca |
5400080 |
T |
|
| Q |
249 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
292 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
5400081 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 3540978 - 3541121
Alignment:
| Q |
149 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || |||||||||||||| || |||||||| |
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|
| T |
3540978 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtccagaggaagttca |
3541077 |
T |
|
| Q |
249 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
292 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
3541078 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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