View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_40 (Length: 234)
Name: NF13565_low_40
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 37113618 - 37113406
Alignment:
| Q |
1 |
ctgaattggtgggacttgatgtggttcggtatgggcgccgtcattggttctggaatatttgtgcttaccggacttgaggctaggcaggaagcaggtccgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37113618 |
ctgaattggtgggacttgatgtggttcggtatgggcgccgtcattggttctggaatatttgtgcttaccggacttgaggctaggcaggaagcaggtccgg |
37113519 |
T |
|
| Q |
101 |
cagttgtattgtcgtttgtcatctccggtatatctgctttgctatcggtgttttgttatacagaatttgctgtggaaattccggttgcaggtactttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37113518 |
cagttgtattgtcgtttgtcatctccggtatatctgctttgctatcggtgttttgttatacagaatttgctgtggaaattccggttgcaggtactttctc |
37113419 |
T |
|
| Q |
201 |
ttaccctcactat |
213 |
Q |
| |
|
||||||||||||| |
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| T |
37113418 |
ttaccctcactat |
37113406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 37126356 - 37126144
Alignment:
| Q |
1 |
ctgaattggtgggacttgatgtggttcggtatgggcgccgtcattggttctggaatatttgtgcttaccggacttgaggctaggcaggaagcaggtccgg |
100 |
Q |
| |
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||||| |||||||||||||||||||| ||||| || || ||| | || || |||||||||||||| |||||||||||||||| |||| | |||||||||| |
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| T |
37126356 |
ctgaactggtgggacttgatgtggtttggtatcggtgcggtcgtcggctccggaatatttgtgctgaccggacttgaggctaagcagcatgcaggtccgg |
37126257 |
T |
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| Q |
101 |
cagttgtattgtcgtttgtcatctccggtatatctgctttgctatcggtgttttgttatacagaatttgctgtggaaattccggttgcaggtactttctc |
200 |
Q |
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||||||| ||||| |||||||||||||| |||||||||||| |||| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
37126256 |
cagttgtgttgtcatttgtcatctccggcatatctgctttgttatcagtattttgctatacagagtttgcggtggaaattccggttgcaggtactttctc |
37126157 |
T |
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| Q |
201 |
ttaccctcactat |
213 |
Q |
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||| |||||||| |
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| T |
37126156 |
ttattctcactat |
37126144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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