View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_45 (Length: 206)
Name: NF13565_low_45
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 10566656 - 10566484
Alignment:
| Q |
17 |
agttaaaacacaagtgtggtgtatggtggtcgtagttgatgataaaagttacccaactgaatgttaatgcttccatagaaacaaataaaaatcaaaatat |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10566656 |
agttaaaacacaagtgtggtgtatggtggttgtagttgatgataaaagttacccaactgaatgttaatgcttctatagaaacaaataaaaatcaaaatat |
10566557 |
T |
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| Q |
117 |
aaactgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagacaaatgaggagtcaatctca |
189 |
Q |
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| T |
10566556 |
aatttgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagacaaatgaggagtcaatctca |
10566484 |
T |
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Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 45521103 - 45520929
Alignment:
| Q |
17 |
agttaaaacacaagtgtggtgtatggtggtcgtagttgatgataaaagttacccaactgaatgttaatgcttccatagaaacaaataaaaatcaaaatat |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45521103 |
agttaaaacacaagtgtggtgtatggtggttgtagttgatgataaaagttacccaattgaatgttaatgcttccatagaaacagataaaaatcaaaatat |
45521004 |
T |
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| Q |
117 |
aaac--tgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagacaaatgaggagtcaatctca |
189 |
Q |
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|||| |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45521003 |
aaacagtgacacataaatgaaagcctcacgcatgttaattacgtaaagggtgagacaaatgaggagtcaatctca |
45520929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 52728111 - 52728266
Alignment:
| Q |
17 |
agttaaaacacaagtgtggtgt-atggtggtcgtagttgatgataaaagttacccaactgaatgttaatgcttccatagaaacaaataaaaatcaaaata |
115 |
Q |
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|||||||||||||||||||||| |||||||| ||| |||||| | ||| ||||| ||| |||||| | ||||| |||||||||||||||||||||||||| |
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| T |
52728111 |
agttaaaacacaagtgtggtgtgatggtggttgtatttgatgttgaaaattacc-aacagaatgtaagtgctttcatagaaacaaataaaaatcaaaata |
52728209 |
T |
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| Q |
116 |
taaac--tgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagacaa |
172 |
Q |
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|| || ||| | |||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
52728210 |
tacacagtgagaaagaaatgaaagtctca--catgttaattacataaaaggagagacaa |
52728266 |
T |
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