View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_5 (Length: 588)
Name: NF13565_low_5
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 16 - 588
Target Start/End: Original strand, 45709403 - 45709975
Alignment:
| Q |
16 |
tcataacgtaccatagcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtccaagttaaagg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709403 |
tcataacgtaccatagcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtccaagttaaagg |
45709502 |
T |
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| Q |
116 |
acacccaccacaaacagtataagccaacatcccaaaaaccaaaatccaccaagaaacatccaaagcaatagcagcaccaataagtccaaaatcccaaaca |
215 |
Q |
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| T |
45709503 |
acacccaccacaaacagtataagccaacatcccaaaaaccaaaatccaccaagaaacatccaaagcaatagcagcaccaataagtccaaaatcccaaaca |
45709602 |
T |
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| Q |
216 |
aaaatcaacagccaactaagcaccacatttaccaccaaaccaaccaaagaaacccaagcaatcacacctgttttcagctggcattgtagaaacctctgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45709603 |
aaaatcaacagccaactaagcaccacatttaccaccaaaccaaccaaagaaacccaagcaatcacaccagttttcagctggcattgtagaaacctctgaa |
45709702 |
T |
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| Q |
316 |
gaggaaactgaaatgcaaaactgaaatgcaaaggtataagccagatagccacaataccactccattctgccacgtcatcaggttgtcctagaagtttgag |
415 |
Q |
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| T |
45709703 |
gaggaaactgaaatgcaaaactgaaatgcaaaggtataagccagatagccacaataccactccattctgccacgtcatcaggttgtcctagaagtttgag |
45709802 |
T |
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| Q |
416 |
aattggagtggcaaagatataaaacggcaacagtaaaaaacaacaaaggaacagaacaatccaagatctttgtaggtatattcctaataagttatgtttc |
515 |
Q |
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| T |
45709803 |
aattggagtggcaaagatataaaacggcaacagtaaaaaacaacaaaggaacagaacaatccaagatctttgtaggtatattcctaataagttatgtttc |
45709902 |
T |
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| Q |
516 |
tttgccccaaaagcttgcccacaaagtgtctccaatgcgcttgccatccccaactagctccatcataaaaacc |
588 |
Q |
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| T |
45709903 |
tttgccccaaaagcttgcccacaaagtgtctccaatgcgcttgccatccccaactagctccatcataaaaacc |
45709975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 45718883 - 45718959
Alignment:
| Q |
30 |
agcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtcca |
106 |
Q |
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| T |
45718883 |
agcatgacaccagaagccaaagatagtttaaagaaatcccataaaccaacaaaagcttcaactgaaaaaccattcca |
45718959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 14092707 - 14092598
Alignment:
| Q |
24 |
taccatagcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtccaagttaaaggacacccac |
123 |
Q |
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| T |
14092707 |
taccatagcataacaccagaagcagcagaaagtttaacaaattcccaaagcccagaaaaagcctccatagaaaacccattccaagtcaaaggacaaccac |
14092608 |
T |
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| Q |
124 |
cacaaacagt |
133 |
Q |
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| T |
14092607 |
cataaacagt |
14092598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 14104369 - 14104269
Alignment:
| Q |
23 |
gtaccatagcataactccagaagcaaaagagagtttgaagaaatcccaaagaccagaaaaggcttcaattgaaaaaccagtccaagttaaaggacaccca |
122 |
Q |
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| T |
14104369 |
gtaccagagcataaccccagaagcagcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaacca |
14104270 |
T |
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| Q |
123 |
c |
123 |
Q |
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| T |
14104269 |
c |
14104269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 567
Target Start/End: Original strand, 29112164 - 29112251
Alignment:
| Q |
480 |
gatctttgtaggtatattcctaataagttatgtttctttgccccaaaagcttgcccacaaagtgtctccaatgcgcttgccatcccca |
567 |
Q |
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| T |
29112164 |
gatctttgcatgtatattcctaacatgtctagtttccctgctccgaaagcttgtccacatagtgtctccaatgcgcttcccatcccca |
29112251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 570
Target Start/End: Original strand, 6588294 - 6588342
Alignment:
| Q |
522 |
ccaaaagcttgcccacaaagtgtctccaatgcgcttgccatccccaact |
570 |
Q |
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| T |
6588294 |
ccaaatgcttgcccacatagtgtctccaatgcacttcccatacccaact |
6588342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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