View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13565_low_8 (Length: 528)
Name: NF13565_low_8
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 6124004 - 6123618
Alignment:
| Q |
9 |
acatcatcaagtacaatgaaaactcttttaccactaattccatgaaaatcagatgtagtaattttttgctttagtagatcgttgtgaagcttatcacgta |
108 |
Q |
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| T |
6124004 |
acatcatcaagtacaatgaaaactcttttaccactaattccatgaaaatcagatgtaataattttttgctttagtagatcattgagaagcttatcacgta |
6123905 |
T |
|
| Q |
109 |
gatagggaagtccaaattcttttgacccttggcttatgctttctaagaagcatgaactgtcaaaatgcatgaagtgcttcgaaaacatttgtcttgctat |
208 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6123904 |
gatagggaagtccaaattcttttaacccttggcttatgctttctaagaagcatgaactgtcaaaatgcatgaagtgcttcgaaaacatttgtcttgctat |
6123805 |
T |
|
| Q |
209 |
ggttgtttttcctaatccatccataccccaaattccaattcttggaacctttttaagataattctcaacttcttcacctttttcatcaatttgaatgaga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6123804 |
ggttgtttttcctaatccatccataccccaaattccaattcttggaacctttttaagataattctcaacttcttcacctttttcatcaatttgaatgaga |
6123705 |
T |
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| Q |
309 |
tctcttagttcattaggatacaaccgggatagtgtttgtaagacgtctttcacaatacattgaatgaattgagaatcatcactagac |
395 |
Q |
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| T |
6123704 |
tctcttagttcattaggatacaaccgggatagtgtttgtaaaacgtctttcacaatacattgaatgaattgagaatcatcactagac |
6123618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 447 - 512
Target Start/End: Complemental strand, 6123566 - 6123501
Alignment:
| Q |
447 |
tagacttaatcatgaatgcttcaatttactagatactcaccccataaggtgaataaacggggtttg |
512 |
Q |
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| T |
6123566 |
tagacttaaccatcaatgcttcaatttgctagatactcaccccataatgtgaataaacggagtttg |
6123501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 6187848 - 6187921
Alignment:
| Q |
180 |
aagtgcttcgaaaacatttgtcttgctatggttgtttttcctaatccatccataccccaaattccaattcttgg |
253 |
Q |
| |
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|||| ||| |||||||| ||| ||||||||||||| ||||||| |||| ||| |||||||||||||||||||| |
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| T |
6187848 |
aagttcttggaaaacatctgttttgctatggttgtctttcctattccactcatgccccaaattccaattcttgg |
6187921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 6046468 - 6046540
Alignment:
| Q |
180 |
aagtgcttcgaaaacatttgtcttgctatggttgtttttcctaatccatccataccccaaattccaattcttg |
252 |
Q |
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| T |
6046468 |
aagtgctttgcaaacatctgtctggctatggttgtcttccctattccacccatgccccaaattccaattcttg |
6046540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 6062711 - 6062782
Alignment:
| Q |
180 |
aagtgcttcgaaaacatttgtcttgctatggttgtttttcctaatccatccataccccaaattccaattctt |
251 |
Q |
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| T |
6062711 |
aagtgcttggcaaacatctgtctggctatggttgtctttcctattcctcccatgccccaaattccaattctt |
6062782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 6179069 - 6179131
Alignment:
| Q |
191 |
aaacatttgtcttgctatggttgtttttcctaatccatccataccccaaattccaattcttgg |
253 |
Q |
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|||||| ||| ||||||||||||| ||||||| |||| ||| |||||||||||||||||||| |
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| T |
6179069 |
aaacatctgttttgctatggttgtctttcctattccactcatgccccaaattccaattcttgg |
6179131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 6087889 - 6087960
Alignment:
| Q |
180 |
aagtgcttcgaaaacatttgtcttgctatggttgtttttcctaatccatccataccccaaattccaattctt |
251 |
Q |
| |
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|||||||| | |||||||||||| ||||||||||| ||||| | ||| |||| ||||| |||||||||||| |
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| T |
6087889 |
aagtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgccccatattccaattctt |
6087960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 6141012 - 6141074
Alignment:
| Q |
191 |
aaacatttgtcttgctatggttgtttttcctaatccatccataccccaaattccaattcttgg |
253 |
Q |
| |
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|||||| ||| ||||||||||||| ||||||| |||| ||| ||||||||||||| |||||| |
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| T |
6141012 |
aaacatctgttttgctatggttgtctttcctattccactcatgccccaaattccaactcttgg |
6141074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 6196108 - 6196152
Alignment:
| Q |
211 |
ttgtttttcctaatccatccataccccaaattccaattcttggaa |
255 |
Q |
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|||||||||| | |||| |||||||||||||||||| |||||||| |
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| T |
6196108 |
ttgtttttcccattccacccataccccaaattccaagtcttggaa |
6196152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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