View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13565_low_9 (Length: 494)
Name: NF13565_low_9
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_low_9 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 24240343 - 24240126
Alignment:
| Q |
20 |
tcatgtactctgggctttctcttggaaatctcatccattctttgtccattgagtttactaaaaaagaagtgatatctaatcatcatcatctttatgtcat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24240343 |
tcatgtactctgggctttctcttggaaatctcatccattctttgtccattgagtttactaaaaaagaagtgatatctaatcatcatcatctttatgccat |
24240244 |
T |
|
| Q |
120 |
atctaattatctaacaagtaaaatgaagaaagaagaaagaatatctaactatcatcatctctgtgtcatatctaatcatctaacaagtaaaaagaagaac |
219 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24240243 |
atctaattatctaacaagtaaaaggaagaaagaagaaagaatatctaactatcatcatctctgtgtcatatctaatcatctaacaagtaaaaagaa-aac |
24240145 |
T |
|
| Q |
220 |
aaaaagttacaatgagaaa |
238 |
Q |
| |
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||||||||||||||||||| |
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| T |
24240144 |
aaaaagttacaatgagaaa |
24240126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 235 - 480
Target Start/End: Original strand, 32809884 - 32810129
Alignment:
| Q |
235 |
gaaagaaagaaaccatacagtagagagtttattgttggtgtagaaaatgaggatgcaggtcttccttacaactatgtcatcttcaactgtgacaagtata |
334 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
32809884 |
gaaagaaagaaaccatacagtagagtgtttgttgttggtgtagaaaatgaggatgcaggtcttccttacagttatgtcgtcttcaactgtgacaagtata |
32809983 |
T |
|
| Q |
335 |
aaaatatatgaagaaaaattagtacagattgtagtataaatttatggtgattaatgagttaagagagccaattaaataataaaattagtatcattgattt |
434 |
Q |
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|||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
32809984 |
aaaataaatgaagaaaaattagtacagcttgaagtataaatttatggtgattaatgagttcagagagccaattaaataataaaattagtaacattgattt |
32810083 |
T |
|
| Q |
435 |
cagcaaacacaaagacacgcacacaacaattagtcaaatgatgatg |
480 |
Q |
| |
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|| |||| |||||||||||||| |||||||||||||||||||||| |
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| T |
32810084 |
cactaaacgcaaagacacgcacataacaattagtcaaatgatgatg |
32810129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 235 - 480
Target Start/End: Complemental strand, 24240090 - 24239845
Alignment:
| Q |
235 |
gaaagaaagaaaccatacagtagagagtttattgttggtgtagaaaatgaggatgcaggtcttccttacaactatgtcatcttcaactgtgacaagtata |
334 |
Q |
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|||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
24240090 |
gaaagaaagaaaccataccgtagagtgtttgttgttggtgtataaaatgaggatgcaggtcttccttacagctatgtcgtcttcaactgtgacaagtata |
24239991 |
T |
|
| Q |
335 |
aaaatatatgaagaaaaattagtacagattgtagtataaatttatggtgattaatgagttaagagagccaattaaataataaaattagtatcattgattt |
434 |
Q |
| |
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|||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
24239990 |
aaaataaatgaagaaaaattagtacaacttaaagtataaatttatggtgattaatgagttcagagagccaattaaataataaaattagtaacattgattt |
24239891 |
T |
|
| Q |
435 |
cagcaaacacaaagacacgcacacaacaattagtcaaatgatgatg |
480 |
Q |
| |
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|| |||| |||||||||||||| |||||||||||||||||||||| |
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| T |
24239890 |
cactaaacgcaaagacacgcacataacaattagtcaaatgatgatg |
24239845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 32809768 - 32809862
Alignment:
| Q |
20 |
tcatgtactctgggctttctcttggaaatctcatccattctttgtccattgagtttactaaaaaagaagtgatatctaatcatcatcatctttat |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32809768 |
tcatgtactctgggctttctcttggaaatctcatccattctttgtccattgagtttactaaataagaagtgatatctaatcatcatcatctttat |
32809862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 235 - 480
Target Start/End: Complemental strand, 19886871 - 19886626
Alignment:
| Q |
235 |
gaaagaaagaaaccatacagtagagagtttattgttggtgtagaaaatgaggatgcaggtcttccttacaactatgtcatcttcaactgtgacaagtata |
334 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
19886871 |
gaaagaaagaaaccatacagtagagtgtttgttgttggtgtagaaaatgaggatgcaggtcttccttacagttatgtcgtcttcaactgtgacaagtata |
19886772 |
T |
|
| Q |
335 |
aaaatatatgaagaaaaattagtacagattgtagtataaatttatggtgattaatgagttaagagagccaattaaataataaaattagtatcattgattt |
434 |
Q |
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|||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
19886771 |
aaaataaatgaagaaaaattagtacagcttgaagtataaatttatggcgattaatgagttcagagagccaattaaataataaaattagtaacattgattt |
19886672 |
T |
|
| Q |
435 |
cagcaaacacaaagacacgcacacaacaattagtcaaatgatgatg |
480 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||||||||||||||| |
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| T |
19886671 |
cactaaacgcaaagacacgcacataacaattagtcaaatgatgatg |
19886626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 19886987 - 19886893
Alignment:
| Q |
20 |
tcatgtactctgggctttctcttggaaatctcatccattctttgtccattgagtttactaaaaaagaagtgatatctaatcatcatcatctttat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
19886987 |
tcatgtactctgggctttctcttggaaatctcatccattctttgtccattgagtttactaaataagaaatgatatctaatcatcatcatctttat |
19886893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 248 - 479
Target Start/End: Original strand, 11493691 - 11493922
Alignment:
| Q |
248 |
catacagtagagagtttattgttggtgtagaaaatgaggatgcaggtcttccttacaactatgtcatcttcaactgtgacaagtataaaaatatatgaag |
347 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
11493691 |
catacagtagagtgtttgttgttggtgtagaaaatgaggatgcaggtcttccttacagctatgtcgtcttcaactgtgacaagtataaaaataaatgaag |
11493790 |
T |
|
| Q |
348 |
aaaaattagtacagattgtagtataaatttatggtgattaatgagttaagagagccaattaaataataaaattagtatcattgatttcagcaaacacaaa |
447 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |||| |
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|
| T |
11493791 |
aaaaattagtacagcttgaagtataaatttatggtgattaatgagttcagagagccaattaaataataaaattagtaacattgatttcactaaacgcaaa |
11493890 |
T |
|
| Q |
448 |
gacacgcacacaacaattagtcaaatgatgat |
479 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
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| T |
11493891 |
gacacgcacataacaattagtcaaatgatgat |
11493922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 32218919 - 32218713
Alignment:
| Q |
20 |
tcatgtactctgggctttctcttggaaatctcatccattctttgtccattgagtttactaaaaaagaagtgatatctaat---catcatcatctttatgt |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |
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|
| T |
32218919 |
tcatatactctgggctttctcttggaaatctcatccattctttgtccattgagtttaactaaaaagaagtgatatataataatcatcatcatctttatgc |
32218820 |
T |
|
| Q |
117 |
catatctaattatctaacaagtaaaatgaagaaagaagaaagaatatctaactatcatcatctctgtgtcatatctaatcatctaacaagtaaaaagaag |
216 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32218819 |
catgtctaattatctaacaagtaaaaggaagaaagaagaaagaatatctaactatcatcatctctgtatcatatctaatcatctaacaagtaaaaagaag |
32218720 |
T |
|
| Q |
217 |
aacaaaa |
223 |
Q |
| |
|
||||||| |
|
|
| T |
32218719 |
aacaaaa |
32218713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 8723375 - 8723317
Alignment:
| Q |
26 |
actctgggctttctcttggaaatctcatccattctttgtccattgagtttactaaaaaa |
84 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
8723375 |
actctgggatttctcttggaaaatttatccattctttgtccattgagtttactaaaaaa |
8723317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 18199848 - 18199907
Alignment:
| Q |
82 |
aaagaagtgatatctaatcatcatcatctttatgtcatatctaattatctaacaagtaaa |
141 |
Q |
| |
|
||||||| ||||||||| ||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
18199848 |
aaagaaggaatatctaattatcatgatatatatgtcatatctaattatctaacaagtaaa |
18199907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 18199849 - 18199907
Alignment:
| Q |
152 |
aagaaagaatatctaactatcatcatctctgtgtcatatctaatcatctaacaagtaaa |
210 |
Q |
| |
|
||||| |||||||||| |||||| || | | ||||||||||||| |||||||||||||| |
|
|
| T |
18199849 |
aagaaggaatatctaattatcatgatatatatgtcatatctaattatctaacaagtaaa |
18199907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 287949 - 287890
Alignment:
| Q |
82 |
aaagaagtgatatctaatcatcatcatctttatgtcatatctaattatctaacaagtaaa |
141 |
Q |
| |
|
||||||| ||||||||| ||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
287949 |
aaagaaggaatatctaattatcatgatatatatgtcatatctaattatctaacaagtaaa |
287890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 287948 - 287890
Alignment:
| Q |
152 |
aagaaagaatatctaactatcatcatctctgtgtcatatctaatcatctaacaagtaaa |
210 |
Q |
| |
|
||||| |||||||||| |||||| || | | ||||||||||||| |||||||||||||| |
|
|
| T |
287948 |
aagaaggaatatctaattatcatgatatatatgtcatatctaattatctaacaagtaaa |
287890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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