View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13566_high_1 (Length: 2168)
Name: NF13566_high_1
Description: NF13566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13566_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 1049; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 1049; E-Value: 0
Query Start/End: Original strand, 499 - 1599
Target Start/End: Original strand, 8651349 - 8652449
Alignment:
| Q |
499 |
tgtgacttacagtttacaaacagaaccagttcggtttagcttgactcagttcatgaactatctgtcacaattcggttttttacggagagtttatgtttgg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8651349 |
tgtgacttacagtttacaaacagaaccagttcggtttagcttgactcagttcatgaactatctgtcacaattcggttttttacggagagtttatgtttgg |
8651448 |
T |
|
| Q |
599 |
ttcaagttaataatagtaatttagtacagttcggttcacaaagaatccagtattgaaaaagtacagtttggttttctatcgaggtagttcaggttcggtt |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8651449 |
ttcaagttaataatagtaatttagtacagttcggttcacaaagaatccagtattgaaaaagtacagtttggttttctatcgaggtagttcaggttcggtt |
8651548 |
T |
|
| Q |
699 |
cagaaccacataactggtgaaccaaaccattatagtagtatggttcaggacgaacaattagcggttgagttcagttttaccaaactgttggaatggttca |
798 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |
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|
| T |
8651549 |
cagaaccacataactggtgaaccaaaccattatagtagtttggttcaggacgaacaattagtggtttagctcagttttaccaaactgttggaatggttca |
8651648 |
T |
|
| Q |
799 |
gttcggttttcttcctaaatcaaactaatagaatataaaataggaagtgttgatgaaacttacagcgaaaatagtagcatgaccaggatcagcaaggtga |
898 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8651649 |
gttcggttttcttcctaaatcaaactattagaatataaaataggaggtgttgatgaaacttacagcgaaaatagtagcatgaccaggatcagcaaggtga |
8651748 |
T |
|
| Q |
899 |
gcaaaaaggttatcaataggaccagtgccggtgtaaatgtgctggaaccaagctcccatcacagccaacatagccaatctcccattcttaatttcctttg |
998 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8651749 |
gcaaaaaggttatcaataggaccagtgccggtgtaaatgtgctggaaccaagctcccatcacagccaacatagccaatctcccattcttaatttcctttg |
8651848 |
T |
|
| Q |
999 |
ttctcaactccttaagcttctgaggagaaccacttccccaaccaagtggatcaaaccaaagtccacccgggtatcctacatcagttcctgtgagcttgtt |
1098 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8651849 |
ttctcaactccttaagcttctgaggagaaccacttccccaaccaagtggatcaaaccaaagtccacccgggtatcctacatcagttcctgtgagcttgtt |
8651948 |
T |
|
| Q |
1099 |
gtttggaaagatagggtcagtgttgacacaacctggattgaggatgtcagcccaccttctaccctcagcccaaccgatgaaaatgagctcaactatgaag |
1198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
8651949 |
gtttggaaagatagggtcagtgttgacacaacctggattgaggatgtcagcccaccttctaccctcggcccaaccgatgaaaatgagctcaactatgaag |
8652048 |
T |
|
| Q |
1199 |
agtgtggtggtgtctgtgaaatactcttgctctccagcagtgtaccatgaaggtgtgttcaagataccaatctttgttaggaattctgggatgaaaattc |
1298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8652049 |
agtgtggtggtgtctgtgaaatactcttgctctccagcagtgtaccatgaaggtgtgttcaagataccaatctttgttaggaattctgggatgaaaattc |
8652148 |
T |
|
| Q |
1299 |
ctgctgctcccaacattgcccatctgcagtgcacaagctcggcttgaacattccatttcagactctctggatcagaggctgttgaatcacaaccaaaact |
1398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8652149 |
ctgctgctcccaacattgcccatctgcagtgcacaagctcggcttgaacattccatttcagactctctggatcagaggctgttgaatcacaaccaaaact |
8652248 |
T |
|
| Q |
1399 |
ttgattaatattatggtcatttgtattcccaacaatgaaaataagaccaccgttgtctctaaatacatgaccatgttgacgaaatcaagagaaattaaga |
1498 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8652249 |
ttgattaatattatggtcgtttgtattcccagcaaggataataagaccaccgttgtctctaaatacatgaccatgttgacgaaatcaagaaaaattaaga |
8652348 |
T |
|
| Q |
1499 |
aagttcgtagtaatattaaacttattaatagttgtttgttattgatttacaagtttactctttggaagagaaaattggtttatgtttccatcttactatt |
1598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8652349 |
aagttcgtagtaatattaaacttattaatagttgtttgttattgatttacaagtttactctttagaagagaaaattggtttatgtttccatcttactatt |
8652448 |
T |
|
| Q |
1599 |
t |
1599 |
Q |
| |
|
| |
|
|
| T |
8652449 |
t |
8652449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1679 - 2150
Target Start/End: Original strand, 8652490 - 8652963
Alignment:
| Q |
1679 |
gaggattttatattttgggatgaagttagtaatgtgtactacttgatcaaatattcaaacttggattttctacggtagtaaaaggccaaagttgacacag |
1778 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8652490 |
gaggattttatatttagggatgaagttagtaatgtgtactacttgatcaaatattcgaacttggattttctacggtagtaaaaggccaaagttgacacag |
8652589 |
T |
|
| Q |
1779 |
t--tgcgcaacatgaaccatctaatccaaatcagacaacttacattctgaggttaaattttgaatcccattttctcgtctcagaataaaactcgtctaat |
1876 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8652590 |
tgttgcgcaacatgaaccatctaatccaaatcagacaacttacattctgaggttaaattttgaatcccgttttctcgtctcagaataaaactcgtctaat |
8652689 |
T |
|
| Q |
1877 |
caagatcggacaagtcagaccatgtaagtggaacaactgcatggtagattttattttactattgcaatcaatccaattcagtgacnnnnnnntttgtgta |
1976 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
8652690 |
caagatcggacaagtcagactatgtaagtggaacaactgcatggtagattttattttactattgctttcaatccgattcagtgacaaaaaaatttgtgta |
8652789 |
T |
|
| Q |
1977 |
ataattaaacttacaaagtccaagaggatcaaaaccaaaatctcctgggagactgccatctagccatggaggaggggtgcttcctgggaaccacaaaggt |
2076 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8652790 |
ataattaaacttacaaagtccaagaggatcaaaaccaaaatctcctgggagactgccatctagccatggaggaggggtgcttcctgggaaccacaaaggt |
8652889 |
T |
|
| Q |
2077 |
ctatcaggctcagctgctgcacacactgttgtggtagatctcactctaactggtgctgcaatgttgctgttcac |
2150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8652890 |
ctatcaggctcagctgctgcacacactgttgtggtagatctcactctaactggtgctgcaatgttgctgttcac |
8652963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 239 - 437
Target Start/End: Original strand, 8651089 - 8651287
Alignment:
| Q |
239 |
tcacagttataaaactaagttagaagaagaacaaactatggatttcttttctttgtagtaaagtgtagagttcagctgaaagataatcaaagtctgatga |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8651089 |
tcacagttataaaactaagttagaagaagaacaaactacggatttcttttctttgtagtaaagtgtagagttcagctgaaagataatgaaagtctgatga |
8651188 |
T |
|
| Q |
339 |
tgaaggactgttttagtgtggaatcaaactcgagtattactcaaacgattttatcttaactaaaacgcatcaaccacctggtttcagttaggactgttt |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8651189 |
tgaaggactgttttagtgtggaatcaaactcgagtattactcaaacgattttatcttaactaaaacgcatcaaccacctggtttcagttaggactgttt |
8651287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 5e-85
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 8650851 - 8651032
Alignment:
| Q |
1 |
catcacatagaagtagtaggtagccattttacaacctttcaccaacataaacactcctccctnnnnnnncatgtaagccttactacttagtaaaacaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8650851 |
catcacatagaagtagtaggtagccattttacaacctttcaccaacataaacactcctccctaaaaaaacatgtaagccttactacttagtaaaacaggt |
8650950 |
T |
|
| Q |
101 |
tcaccattgtttcttcaaggcttacaacctcatagttgtccttcctagctcttctcacttgggagtgaaagcctgtagtagc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8650951 |
tcaccattgtttcttcaaggcttacaacctcatagttgtccttcctagctcttctcacttgggagtgaaagcctgtagtagc |
8651032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 8643183 - 8643214
Alignment:
| Q |
246 |
tataaaactaagttagaagaagaacaaactat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8643183 |
tataaaactaagttagaagaagaacaaactat |
8643214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 604 - 645
Target Start/End: Original strand, 28990092 - 28990133
Alignment:
| Q |
604 |
gttaataatagtaatttagtacagttcggttcacaaagaatc |
645 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28990092 |
gttaataatagtaatttagtacaattcggttcacaaagaatc |
28990133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1539 - 1603
Target Start/End: Complemental strand, 2217669 - 2217605
Alignment:
| Q |
1539 |
attgatttacaagtttactctttggaagagaaaattggtttatgtttccatcttactatttatca |
1603 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |||| |||||||||| | || || ||||||||| |
|
|
| T |
2217669 |
attgttttacaagtttactctttagaagagagaattagtttatgttttcgtcataatatttatca |
2217605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 603 - 645
Target Start/End: Complemental strand, 36854746 - 36854704
Alignment:
| Q |
603 |
agttaataatagtaatttagtacagttcggttcacaaagaatc |
645 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
36854746 |
agttaagaatagcaatttggtacagttcggttcacaaagaatc |
36854704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 35034068 - 35034110
Alignment:
| Q |
603 |
agttaataatagtaatttagtacagttcggttcacaaagaatc |
645 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
35034068 |
agttaagaatagcaattttgtacagttcggttcacaaagaatc |
35034110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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