View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13566_high_2 (Length: 589)
Name: NF13566_high_2
Description: NF13566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13566_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 39883524 - 39882944
Alignment:
| Q |
1 |
ccatctatattaagtttgaatcgcccaggaggatggacttaattaa----ttgatgtgcattattgattccctagatgccttgggcgcttgcaattttgt |
96 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39883524 |
ccatctatattaagtttgaatcgcccaagaggatggacttaattatgcttttgatgtgcattattgattccctagatgccttgggcgcttgcaattttgt |
39883425 |
T |
|
| Q |
97 |
tataatattatgacgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaatatgagcatgttcatgtccttccaaagaatcc |
196 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39883424 |
tacaatatcatgacgtgattgttaaccgaactccatagtttatctcccatatatgactgatgagaaaatatgagcatgttcatgtccttccaaagagtcc |
39883325 |
T |
|
| Q |
197 |
acaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaaaaagttcgagaccaaa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39883324 |
acaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccttgcacgtcaagttccatttaatccaaacaaaaagttcgagaccaaa |
39883225 |
T |
|
| Q |
297 |
gaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctcatgcatcacaagctttatgtttcattgatataga |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39883224 |
gaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctcatacatcacaagctttatgtttcattgatataga |
39883125 |
T |
|
| Q |
397 |
ccaatcacgatatattaacataaagcttgtagcagcttcaaactactttgaagttgaagaacgtcctggtataaaactaccttcatgttgtgagaccaca |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
39883124 |
ccaatcacgatatattaacataaagcttgtagcagcttcaaactactttgaagttgaagaacgtcctggtataaaactacttgcatgttgtgagaccaca |
39883025 |
T |
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| Q |
497 |
taaggcatgatattccttattctataagccaagatttttcaaattattttatagctcgcgttacataaagcaatgggtctg |
577 |
Q |
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| T |
39883024 |
taaggcatgatattccttattctataagccaagattttttaaattattttatagctcacgttacataaagcaatgggtctg |
39882944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 362
Target Start/End: Original strand, 40645364 - 40645543
Alignment:
| Q |
181 |
tccttccaaagaatccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaa |
280 |
Q |
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|||||| ||||| ||||||||| |||||||| || ||| ||||||| |||| || |||| || | ||| | ||| | |||||||||| ||||||||||| |
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| T |
40645364 |
tccttcgaaagatcccacaccatgactccaaagaaaatataccaatcccaag-taaattatcattctccttacacgttaagttccattcaatccaaacaa |
40645462 |
T |
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| Q |
281 |
aaagttcgagaccaaagaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctc |
362 |
Q |
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| T |
40645463 |
aaagatcgagcctggagaactaactccaatattcttcttttatgaccct-tgaccaaagctccttagtgtcctcacaatctc |
40645543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 36826512 - 36826426
Alignment:
| Q |
198 |
caccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaaaaag |
284 |
Q |
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| T |
36826512 |
caccataactccaaagaagatagaacaatctcaagttacattaccaatgtccttacacgtcaagttctattcaatccaagcaaaaag |
36826426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 42874702 - 42874636
Alignment:
| Q |
109 |
acgtgattgttaaccgaactccatagtttatctcccgtatatgactgatgagaaaatatgagcatgt |
175 |
Q |
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| T |
42874702 |
acgttattgttaactgaattccatagtttatcttccatatttgaccaataagaaaatatgagcatgt |
42874636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 24352009 - 24352080
Alignment:
| Q |
154 |
tgatgagaaaatatgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaa |
225 |
Q |
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| T |
24352009 |
tgatgagaaaatatgaacatgttcctatcattctaaagaacccacaccataacttcaaagaagatagaccaa |
24352080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 283
Target Start/End: Original strand, 42502497 - 42502625
Alignment:
| Q |
155 |
gatgagaaaatatgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgca |
254 |
Q |
| |
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||||||||||||||||||| || || |||||||||| || |||||||| ||||| || || ||| |||||| ||||||| |||| |||| | | || |
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| T |
42502497 |
gatgagaaaatatgagcatatttatatccttccaaacaacccacaccaaaactctgaagaagataaaccaattccaaggtagattaccaatgtaattaca |
42502596 |
T |
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| Q |
255 |
cttcaagttccatttaatccaaacaaaaa |
283 |
Q |
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| T |
42502597 |
cgtcaagttccattcaatttaaacaaaaa |
42502625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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