View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13566_high_3 (Length: 354)
Name: NF13566_high_3
Description: NF13566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13566_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 158 - 336
Target Start/End: Complemental strand, 30724260 - 30724082
Alignment:
| Q |
158 |
caattgatgcacatggttaacaatatgatctttatctcattataaagtatatatattccatgcttggtaccaacatgttcagtataagattaagtcgttt |
257 |
Q |
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| T |
30724260 |
caattgatgcacatggttaacaatatgatctttatctcattataaagtatatatattccatgcttggtaccaacatgttcagtataagattaagtggttt |
30724161 |
T |
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| Q |
258 |
agtaaaatgatattattgttacctccaatccataaaattggatacacttcacttgactgaattgtttgagaagtagaga |
336 |
Q |
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| T |
30724160 |
agtaaaatgatattattgttacctccaatccataaaattggatacacttcacttgactgaattgtttgagaagtagaga |
30724082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 30724430 - 30724295
Alignment:
| Q |
8 |
cgaagaatattggccctccgcatatagtgacagtacataatgtcaacaaattgtgtcaaaattccagactttcttaaaactaactacatatgagaataaa |
107 |
Q |
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| T |
30724430 |
cgaataatattggccctccgcatatagtgacagtacataatgtcaacaaattgtgtcaaaattacagactttcttaaaaataactacatatgagaataaa |
30724331 |
T |
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| Q |
108 |
cactctacaaatattgcttcagaaatcaaatcaata |
143 |
Q |
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| T |
30724330 |
cactctacaaatattgcttcagaaatcaaatcaata |
30724295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 30709949 - 30709895
Alignment:
| Q |
276 |
ttacctccaatccataaaattggatacacttcacttgactgaattgtttgagaag |
330 |
Q |
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| T |
30709949 |
ttacctccgatccatgaaatttgatacacttaacttgactgaattctttgagaag |
30709895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 30716441 - 30716387
Alignment:
| Q |
276 |
ttacctccaatccataaaattggatacacttcacttgactgaattgtttgagaag |
330 |
Q |
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| T |
30716441 |
ttacctccgatccatgaaatttcatacacttcacttgactgaattgattgagaag |
30716387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 11359473 - 11359511
Alignment:
| Q |
292 |
aaattggatacacttcacttgactgaattgtttgagaag |
330 |
Q |
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| T |
11359473 |
aaatttgatacacttcacttgactgaattgtttaagaag |
11359511 |
T |
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