View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13566_low_12 (Length: 245)
Name: NF13566_low_12
Description: NF13566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13566_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 36770989 - 36770778
Alignment:
| Q |
16 |
atgacaccacagaaactgtaatatcccacaaagccacctttaaataatcaccagaccacttaaaaaacaagttcaatgcaaacaatgttccttacgatgt |
115 |
Q |
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| T |
36770989 |
atgacaccacagaaactgtaatatcccacaaagccacctttaaataatcaccagaccacttaaaaaacaagttcaatgcaaacaatgttccttacgatgt |
36770890 |
T |
|
| Q |
116 |
tatttatatgcagggtctgaaaataggtcccaccatttagtgtattgtatgcggcttagcttgnnnnnnnacataagagcctgttatcaaaacttgaact |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
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| T |
36770889 |
taattatatgcagggtctgaaaataggtcccaccatttagtgtattgtatgcggcttaccttg-ttttttacataagaggctgttatcaaaacttgaact |
36770791 |
T |
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| Q |
216 |
cgtggcttacaat |
228 |
Q |
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||||||||||||| |
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| T |
36770790 |
cgtggcttacaat |
36770778 |
T |
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