View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13566_low_7 (Length: 315)
Name: NF13566_low_7
Description: NF13566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13566_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 5920973 - 5921252
Alignment:
| Q |
16 |
atgaaaaccagaaacaatttcataacagccggaacaaaagtatccccttacaacagagattacgaaccggcaacaggaagttgcagatatgtgttatcca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5920973 |
atgaaaaccagaaacaatttcataacagccggaacaaaagtattcccttacaacagagattacgaaccggcaacaggaagttgcagat--gtgttatcca |
5921070 |
T |
|
| Q |
116 |
ttgcaaaaagcatcaacatgctcacatctcatcatgttcctgctgataatcctcctcttcatcttcatactcatcctcctctgcagtagcatcttgatac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5921071 |
ttgcaaaaagcatcaacatgctcacatctcatcatgttcctgctgataatcctcctcttcatcttcatactcatcctcctctgcagtagcatcttgatac |
5921170 |
T |
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| Q |
216 |
tgttgatattccgacacaagatcattcatgttgctctcagcctcagtgaactccatctcatccattccttcacctgtgtacc |
297 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5921171 |
tgttgatattcagacacaagatcattcatgttgctctcagcctcagtgaactccatctcatccattccttcacctgtgtacc |
5921252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 5934558 - 5934712
Alignment:
| Q |
143 |
ctcatcatgttcctgctgataatcctcctcttcatcttcatactcatcctcctctgcagtagcatcttgatactgttgatattccgacacaagatcattc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5934558 |
ctcatcatgttcctgctgataatcctcctcttcatcttcatactcatcctcctctgcagtagcatcttgatactgttgatattctgacacaagatcattc |
5934657 |
T |
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| Q |
243 |
atgttgctctcagcctcagtgaactccatctcatccattccttcacctgtgtacc |
297 |
Q |
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| T |
5934658 |
atgttgctctcagcctcagtgaactccatctcatccattccttcacctgtgtacc |
5934712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 5532907 - 5532781
Alignment:
| Q |
171 |
tcttcatcttcatactcatcctcctctgcagtagcatcttgatactgttgatattccgacacaagatcattcatgttgctctcagcctcagtgaactcca |
270 |
Q |
| |
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||||| ||| ||||||||||||| || || || |||||||| ||||||||||| || | || |||||||||||||||||||||||||||||||| |||| |
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| T |
5532907 |
tcttcttctccatactcatcctcatcagcggtggcatcttggtactgttgatactcagcaaccagatcattcatgttgctctcagcctcagtgaattcca |
5532808 |
T |
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| Q |
271 |
tctcatccattccttcacctgtgtacc |
297 |
Q |
| |
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| || ||||| |||||||| ||||||| |
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| T |
5532807 |
tttcgtccatgccttcaccagtgtacc |
5532781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 38176916 - 38177036
Alignment:
| Q |
177 |
tcttcatactcatcctcctctgcagtagcatcttgatactgttgatattccgacacaagatcattcatgttgctctcagcctcagtgaactccatctcat |
276 |
Q |
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|
||||||||||| ||||| || ||||||||||| || || || || || || | ||| | |||||||||||| ||||| ||||||||||||||||| |||| |
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| T |
38176916 |
tcttcatactcttcctcatcagcagtagcatcctggtattgctggtactctgccaccaaatcattcatgttactctcggcctcagtgaactccatttcat |
38177015 |
T |
|
| Q |
277 |
ccattccttcacctgtgtacc |
297 |
Q |
| |
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||||||| ||||| ||||||| |
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| T |
38177016 |
ccattccctcaccagtgtacc |
38177036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 5934412 - 5934494
Alignment:
| Q |
19 |
aaaaccagaaacaatttcataacagccggaacaaaagtatccccttacaaca--gagattacgaaccggcaacaggaagttgc |
99 |
Q |
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|
|||| ||||| |||||||| ||||||| ||||| ||| |||||| |||||| ||||||| ||||||||||||||||||||| |
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| T |
5934412 |
aaaatcagaatcaatttcagaacagccagaacataagcatcccccaacaacaaagagattatgaaccggcaacaggaagttgc |
5934494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 40916226 - 40916310
Alignment:
| Q |
203 |
agcatcttgatactgttgatattccgacacaagatcattcatgttgctctcagcctcagtgaactccatctcatccattccttca |
287 |
Q |
| |
|
|||||||||||| ||||||||||| || || | ||||||||| || |||||||||||||| |||||||||||||||||||||||| |
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| T |
40916226 |
agcatcttgatattgttgatattcagaaaccaaatcattcatattactctcagcctcagtaaactccatctcatccattccttca |
40916310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 45320638 - 45320568
Alignment:
| Q |
216 |
tgttgatattccgacacaagatcattcatgttgctctcagcctcagtgaactccatctcatccattccttc |
286 |
Q |
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||||||||||| | |||||||||||||| ||||| || || ||||| || ||||| |||||||||||||| |
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| T |
45320638 |
tgttgatattcagcaacaagatcattcatattgctttctgcttcagtaaattccatttcatccattccttc |
45320568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 11731826 - 11731892
Alignment:
| Q |
231 |
acaagatcattcatgttgctctcagcctcagtgaactccatctcatccattccttcacctgtgtacc |
297 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||| ||||||| |
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| T |
11731826 |
acaagatcattcatgttactctcagcctcagtgaactccatttcgtccattccctcaccagtgtacc |
11731892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 280
Target Start/End: Original strand, 45452322 - 45452437
Alignment:
| Q |
165 |
tcctcctcttcatcttcatactcatcctcctctgcagtagcatcttgatactgttgatattccgacacaagatcattcatgttgctctcagcctcagtga |
264 |
Q |
| |
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||||| ||||||| |||||| | || || ||||||||||||||||| || || || || || || ||||| |||||||||||||| || || ||||| | |
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| T |
45452322 |
tcctcatcttcatagtcatacccctcttcatctgcagtagcatcttggtattgctggtactctgagacaaggtcattcatgttgctttctgcttcagtaa |
45452421 |
T |
|
| Q |
265 |
actccatctcatccat |
280 |
Q |
| |
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|||||||||||||||| |
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| T |
45452422 |
actccatctcatccat |
45452437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 34841949 - 34841850
Alignment:
| Q |
198 |
gcagtagcatcttgatactgttgatattccgacacaagatcattcatgttgctctcagcctcagtgaactccatctcatccattccttcacctgtgtacc |
297 |
Q |
| |
|
||||| ||||| || ||||| || || || ||||| || ||||||||||||||||| || || ||||| ||||| |||||||| |||||||| ||||||| |
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| T |
34841949 |
gcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctctgcttctgtgaattccatttcatccatgccttcaccagtgtacc |
34841850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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