View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13567_high_1 (Length: 571)
Name: NF13567_high_1
Description: NF13567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13567_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 135 - 560
Target Start/End: Original strand, 2504653 - 2505078
Alignment:
| Q |
135 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504653 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
2504752 |
T |
|
| Q |
235 |
tttctacttcactagggtttaaactgtaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatccgtgctagtc |
334 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2504753 |
tttctacttcactagggtttaaactctaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatccttgctagtc |
2504852 |
T |
|
| Q |
335 |
ttctacttttgattcttatatatcgtcttttcatatattgcatacatttgatgaaacattctctgatgcaatattgttcaaactctgcagatcattccaa |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504853 |
ttctacttttgattcttatatatcgtcttttcatatattgcatacatttgatgaaccattctctgatgcaatattgttcaaactctgcagatcattccaa |
2504952 |
T |
|
| Q |
435 |
tggaaccatgcggtgtagggtactggattatctcatcagttcaagtaccactagctgtggttttcactgcttggatggtattaagaaaagaaagtattca |
534 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504953 |
tggaaccatgcggtgtaggatactggattatctcatcagttcaagtaccactagctgtggttttcactgcttggatggtattaagaaaagaaagtattca |
2505052 |
T |
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| Q |
535 |
agaccagactctcataccacaggttc |
560 |
Q |
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| T |
2505053 |
agaccagactctcataccacaggttc |
2505078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 2504555 - 2504587
Alignment:
| Q |
35 |
tattgtactgtataaggcactttgatcttgtac |
67 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
2504555 |
tattgtactgcataaggcactttgatcttgtac |
2504587 |
T |
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