View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13567_high_2 (Length: 469)
Name: NF13567_high_2
Description: NF13567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13567_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 182 - 451
Target Start/End: Complemental strand, 32855953 - 32855684
Alignment:
| Q |
182 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
281 |
Q |
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| T |
32855953 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
32855854 |
T |
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| Q |
282 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttaattgatgtg |
381 |
Q |
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| T |
32855853 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttgattgatgtg |
32855754 |
T |
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| Q |
382 |
agcttttaaactttataatacagtctcaaagcaaatcacaattcaacaccagacacgccccggattccac |
451 |
Q |
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| T |
32855753 |
agcttttaaactttataatacagtctcaaaacaaatcacaattcaacaccagacacgccccggattccac |
32855684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 247 - 432
Target Start/End: Complemental strand, 32850489 - 32850285
Alignment:
| Q |
247 |
ttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttcagctggaaaggacctga--------------gtatcagaatgactaa |
332 |
Q |
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| T |
32850489 |
ttgttgcacttagtaacttttagcaaccccaacaggtagcagttggtattttcagctggaaaggacctgataatccctaaagttgtatcagcatgactaa |
32850390 |
T |
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| Q |
333 |
tgatgatttgagcatgtagag--------cagggtaactcttctcttaattgatgtgagcttttaaactttataatacagtctcaaagcaaatcacaatt |
424 |
Q |
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| T |
32850389 |
tgat---ttgagcatgtagaggcgtagagcagggtaactcttctctcaattgatgtgagcttttaaactttataatacagtctcaaaacaaatcacaatt |
32850293 |
T |
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| Q |
425 |
caacacca |
432 |
Q |
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| T |
32850292 |
caacacca |
32850285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 32856116 - 32855987
Alignment:
| Q |
19 |
atttctttccaaagagagatgatttattgggtgatggtagtagccacagagtgcagaacagttacagtgctttgaagatannnnnnnnnnnnnnnncttc |
118 |
Q |
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| T |
32856116 |
atttctttccaaagagagatgatttattgggtgacggtagtagccacagagtgcagaacagttacagtgctttgaagatattttctttttgtttttcttc |
32856017 |
T |
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| Q |
119 |
cagctggagatattatcttagttcaaaggg |
148 |
Q |
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| T |
32856016 |
cagctggagatattatcttagttcaaaggg |
32855987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 32850561 - 32850520
Alignment:
| Q |
183 |
gggaaaaataaaactacaagcgtgggagatgtggtcttgcac |
224 |
Q |
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| T |
32850561 |
gggaaaaataaaactacaatcgtgggagatggggtcttgcac |
32850520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 32850625 - 32850592
Alignment:
| Q |
115 |
cttccagctggagatattatcttagttcaaaggg |
148 |
Q |
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| T |
32850625 |
cttccagctggagatattatcttagttcaaaggg |
32850592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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