View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13567_high_4 (Length: 391)

Name: NF13567_high_4
Description: NF13567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13567_high_4
NF13567_high_4
[»] chr4 (7 HSPs)
chr4 (194-374)||(23613714-23613894)
chr4 (64-198)||(23613174-23613308)
chr4 (64-196)||(4513605-4513740)
chr4 (64-161)||(41702884-41702985)
chr4 (15-63)||(23613051-23613099)
chr4 (121-196)||(53452475-53452550)
chr4 (21-49)||(52470953-52470981)
[»] chr3 (3 HSPs)
chr3 (116-196)||(46170398-46170478)
chr3 (115-167)||(12055680-12055732)
chr3 (13-49)||(45254015-45254051)
[»] chr6 (3 HSPs)
chr6 (64-162)||(10040486-10040588)
chr6 (74-183)||(35018998-35019111)
chr6 (137-196)||(34480794-34480853)
[»] chr8 (2 HSPs)
chr8 (64-196)||(35661486-35661621)
chr8 (146-195)||(14529525-14529574)
[»] chr5 (1 HSPs)
chr5 (64-196)||(42943552-42943688)
[»] chr2 (1 HSPs)
chr2 (64-168)||(9115047-9115156)
[»] chr1 (3 HSPs)
chr1 (74-181)||(4641813-4641924)
chr1 (116-169)||(29525928-29525980)
chr1 (16-56)||(47308946-47308986)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 194 - 374
Target Start/End: Original strand, 23613714 - 23613894
Alignment:
Q  194 aataatgttttggcgcaacattttttcttccattattttttagcattttaaagtccattgtcaatagaagcaaaaacacaaacacattagtacacgtctt 293  Q
    |||| |||||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23613714 aatagtgttttggtgcaacattttttcttccattattttttagcatcttatcgtccattgtcaatagaagcaaaaacacaaacacattagtacacgtctt 23613813  T
Q  294 gacgatagtctatatatgtatactatatacaaagagaatgcatgattttagacttactttttcactttaaaggatatcaac 374  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23613814 gacgttggtctatatatgtatactatatacaaagagaatgcatgattttggacttactttttcactttaaaggatatcaac 23613894  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 23613174 - 23613308
Alignment:
Q  64 ttacaccacctcaatataagtcattgatgtattatttattctaacggactcaatcttatgataaaaaagctgttacaaagtgttattttagtggtgtaag 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |||||| |||||||| ||||||||||| |||||||||    
T  23613174 ttacaccacctcaatataagtcattgatgtattatttattctaacagacccgatcttatgatgaaaaagttgttacaaggtgttattttaatggtgtaag 23613273  T
Q  164 ttggagcattttatttagtgatgtaaactaaataa 198  Q
    |||||||||| ||||||||| ||||||||||||||    
T  23613274 ttggagcattctatttagtggtgtaaactaaataa 23613308  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 4513740 - 4513605
Alignment:
Q  64 ttacaccacctcaatataagtcattgatgtattat----ttattctaacggactcaatcttatgataaaaaagctgttacaaagtgttattttagtggtg 159  Q
    |||||||||||||||||||||||||||| ||||||    |||||||||||| |   |||||||||| |||| ||| |||||| |||||||||||||||||    
T  4513740 ttacaccacctcaatataagtcattgatatattataaatttattctaacggtccggatcttatgatgaaaa-gctattacaaggtgttattttagtggtg 4513642  T
Q  160 taagttggagcattttatttagtgatgtaaactaaat 196  Q
    |||||||| |||||||||||  || ||||||||||||    
T  4513641 taagttggggcattttatttgatggtgtaaactaaat 4513605  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 41702985 - 41702884
Alignment:
Q  64 ttacaccacctcaatataagtcattgatgtattat----ttattctaacggactcaatcttatgataaaaaagctgttacaaagtgttattttagtggtg 159  Q
    |||||||||||||||||||| ||||||  ||||||    |||||||||||  ||  |||||||||||||||||||||||||| |||||||||||||||||    
T  41702985 ttacaccacctcaatataagccattgacatattataaatttattctaacgatctggatcttatgataaaaaagctgttacaaggtgttattttagtggtg 41702886  T
Q  160 ta 161  Q
    ||    
T  41702885 ta 41702884  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 23613051 - 23613099
Alignment:
Q  15 tatgaggaacaatctacaataatatgaacaatattggacacactataaa 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23613051 tatgaggaacaatctacaataatatgaacaatattggacacactataaa 23613099  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 53452475 - 53452550
Alignment:
Q  121 atgataaaaaagctgttacaaagtgttattttagtggtgtaagttggagcattttatttagtgatgtaaactaaat 196  Q
    |||||||||||||| ||||||  ||||||||||||||| ||||||| |||||| ||||||||  ||||||||||||    
T  53452475 atgataaaaaagctattacaatatgttattttagtggtataagttgtagcattctatttagtagtgtaaactaaat 53452550  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 52470981 - 52470953
Alignment:
Q  21 gaacaatctacaataatatgaacaatatt 49  Q
    |||||||||||||||||||||||||||||    
T  52470981 gaacaatctacaataatatgaacaatatt 52470953  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 46170478 - 46170398
Alignment:
Q  116 atcttatgataaaaaagctgttacaaagtgttattttagtggtgtaagttggagcattttatttagtgatgtaaactaaat 196  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  46170478 atcttacgataaaaaagatgttacaacgtgttattttagtggtgtaagctggagcattctatttagtggtgtaaactaaat 46170398  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 12055732 - 12055680
Alignment:
Q  115 aatcttatgataaaaaagctgttacaaagtgttattttagtggtgtaagttgg 167  Q
    ||||||||||| ||| | ||| ||||||| |||||||||||||||||||||||    
T  12055732 aatcttatgatgaaataactgctacaaagagttattttagtggtgtaagttgg 12055680  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 45254051 - 45254015
Alignment:
Q  13 aatatgaggaacaatctacaataatatgaacaatatt 49  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  45254051 aataagaggaacaatctacaataataagaacaatatt 45254015  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 10040486 - 10040588
Alignment:
Q  64 ttacaccacctcaatataagtcattgatgtattatt----tattctaacggactcaatcttatgataaaaaagctgttacaaagtgttattttagtggtg 159  Q
    |||||||||||||| ||||||||||||| |||||||    |||||||||||||   |||||||||| |||||| |||||||| |||||||||||||||||    
T  10040486 ttacaccacctcaaaataagtcattgatatattattaatttattctaacggaccggatcttatgatgaaaaagttgttacaaggtgttattttagtggtg 10040585  T
Q  160 taa 162  Q
    |||    
T  10040586 taa 10040588  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 35019111 - 35018998
Alignment:
Q  74 tcaatataagtcattgatgtatt----atttattctaacggactcaatcttatgataaaaaagctgttacaaagtgttattttagtggtgtaagttggag 169  Q
    |||||||||| ||||||| ||||    |||||||||||||||    |||||||||| ||||||||| ||||||| ||||||||||||||||||||||  |    
T  35019111 tcaatataagccattgatatattttaaatttattctaacggatcggatcttatgatgaaaaagctgctacaaagggttattttagtggtgtaagttgagg 35019012  T
Q  170 cattttatttagtg 183  Q
    |||| |||||||||    
T  35019011 cattctatttagtg 35018998  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 34480853 - 34480794
Alignment:
Q  137 tacaaagtgttattttagtggtgtaagttggagcattttatttagtgatgtaaactaaat 196  Q
    ||||||| ||||||||| ||||||||||||||| | | ||||||||| || |||||||||    
T  34480853 tacaaagggttattttattggtgtaagttggagtaatgtatttagtggtgaaaactaaat 34480794  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 35661486 - 35661621
Alignment:
Q  64 ttacaccacctcaatataagtcattgatgtattat----ttattctaacggactcaatcttatgataaaaaagctgttacaaagtgttattttagtggtg 159  Q
    |||||||||| ||||||||| ||||||| ||||||    ||||| |||||| |   ||||||||||||| |||||||||||| |||||||||||||||||    
T  35661486 ttacaccacc-caatataagccattgatatattataaatttattttaacggtccggatcttatgataaagaagctgttacaaggtgttattttagtggtg 35661584  T
Q  160 taagttggagcattttatttagtgatgtaaactaaat 196  Q
    ||||| |  ||||| ||||| ||| ||||||||||||    
T  35661585 taagtcgaggcattctatttggtggtgtaaactaaat 35661621  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 14529574 - 14529525
Alignment:
Q  146 ttattttagtggtgtaagttggagcattttatttagtgatgtaaactaaa 195  Q
    ||||| |||||||||||||||  ||| ||||||||||| |||||||||||    
T  14529574 ttattatagtggtgtaagttgaggcaatttatttagtggtgtaaactaaa 14529525  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 42943552 - 42943688
Alignment:
Q  64 ttacaccacctcaatataagtcattgatgtattat----ttattctaacggactcaatcttatgataaaaaagctgttacaaagtgttattttagtggtg 159  Q
    |||||||||||||||||||| |||| || ||||||    ||||| ||||||||   || ||||||| |||||| |||||||  |||||||||||||||||    
T  42943552 ttacaccacctcaatataagccattaatatattataaatttattttaacggaccagattttatgatgaaaaagttgttacagggtgttattttagtggtg 42943651  T
Q  160 taagttggagcattttatttagtgatgtaaactaaat 196  Q
    ||||||||||| || |||||| || ||||||| ||||    
T  42943652 taagttggagcgttctatttaatggtgtaaaccaaat 42943688  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 9115047 - 9115156
Alignment:
Q  64 ttacaccacctcaatataagtcattgatgtattat----ttattctaacggactcaatcttatgataaaaaagctgttacaaag-tgttattttagtggt 158  Q
    |||||||||||||||||||  ||||||| ||||||    ||||| ||| ||||  ||||||||||| |||||| |||||||| | |||||||||||||||    
T  9115047 ttacaccacctcaatataaaccattgatatattataaatttattttaaaggaccgaatcttatgatgaaaaagatgttacaagggtgttattttagtggt 9115146  T
Q  159 gtaagttgga 168  Q
    ||||||||||    
T  9115147 gtaagttgga 9115156  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 4641813 - 4641924
Alignment:
Q  74 tcaatataagtcattgatgtatt----atttattctaacggactca-atcttatgataaaaaagctgttacaaagtgttattttagtggtgtaagttgga 168  Q
    |||||||||||||||||| ||||    ||||||||||||||| ||| |||| ||||| ||||||||| ||||| | ||||||||| | | ||||||||||    
T  4641813 tcaatataagtcattgatatattttaaatttattctaacgga-tcagatctcatgatgaaaaagctgctacaaggggttattttattagcgtaagttgga 4641911  T
Q  169 gcattttatttag 181  Q
    |||||||||||||    
T  4641912 gcattttatttag 4641924  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 29525928 - 29525980
Alignment:
Q  116 atcttatgataaaaaagctgttacaaagtgttattttagtggtgtaagttggag 169  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||||||||||    
T  29525928 atcttatgatgaaaaag-tgttacaaggtgttattttagtggtgtaagttggag 29525980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 47308986 - 47308946
Alignment:
Q  16 atgaggaacaatctacaataatatgaacaatattggacaca 56  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  47308986 atgatgaacaatccacaataatatgaacaatattggacaca 47308946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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