View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13567_low_3 (Length: 431)
Name: NF13567_low_3
Description: NF13567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13567_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 25334412 - 25334813
Alignment:
| Q |
13 |
aatatggtatccaaatcatttgggttattccttttgattgcttggaatctctcacaactcattcctccatgccatggaactttgcacttcgcgcaaaagc |
112 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25334412 |
aatatggtatccaaatcattagggttactccttttgattgcttggaatctctcacaactcattcctccatgccacggaactttgcacttcgcgcaaaagc |
25334511 |
T |
|
| Q |
113 |
gtctattacacgagggacacttagaagaacatttgtcgatgcctcgttcaataaggtcttctttgtccaacaagacggaacaattctcaaacgggcaata |
212 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||||||| | | || ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25334512 |
gtctgtgacacgaaggacacttagaagaacatttgtcaacgtctttttcgataagatcttctttgtccaacaaaacggaacaattctcaaacgggcaata |
25334611 |
T |
|
| Q |
213 |
agtcttctcctcagagggaatagaaaactcagaaattaaatactcccatttatcaaaaacctttttaggtaaaatgtgattaaaatgttttggcttatat |
312 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25334612 |
agtcttcttctcagagggaatagaaaactcagaaattaaatactcccatttatcaaacacctttttaggtaaaatgtgattaaaatgttttggattatat |
25334711 |
T |
|
| Q |
313 |
ttcacacaacaatttggacttggacacatcactttaagtggattttcattgatttcaacttctacatacttgcatatgcattcaacacaaaagaagtgct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25334712 |
ttcacacaacaatttggacttggacacatcactttaagtggattttcattgatttcaacttctacatacttgcatatgcattcaacacaaaagaagtgct |
25334811 |
T |
|
| Q |
413 |
tg |
414 |
Q |
| |
|
|| |
|
|
| T |
25334812 |
tg |
25334813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 25345494 - 25345877
Alignment:
| Q |
20 |
tatccaaatcatttgggttattccttttgattgcttggaatctctcacaactcattcctccatgccatggaactttgcacttcgcgcaaaagcgtctatt |
119 |
Q |
| |
|
|||||||||||||| || ||||||||| | | ||||||| ||| |||| |||||||| |||||||||||||||||||||| || ||||| |||| | |
|
|
| T |
25345494 |
tatccaaatcatttttgtcattccttttaaattgttggaatttctgacaattcattcctgcatgccatggaactttgcactttgcacaaaattgtctgtg |
25345593 |
T |
|
| Q |
120 |
acacgagggacacttagaagaacatttgtcgatgcctcgttcaataaggtcttctttgtccaacaagacggaacaattctcaaacgggcaataagtcttc |
219 |
Q |
| |
|
|||||| || ||| ||||| | ||| | ||| | ||||| | ||||||| ||||||| || ||||||||| || | ||||| ||||||||| |
|
|
| T |
25345594 |
acacgaagggcacctagaactgc---tgttaaattctcttccaatatcattttctttgcccaacaaaacagaacaattcgcataagggcagtaagtcttc |
25345690 |
T |
|
| Q |
220 |
tcctcagagggaatagaaaactcagaaattaaatactcccatttatcaaaaacctttttaggtaaaatgtgattaaaatgttttggcttatatttcacac |
319 |
Q |
| |
|
||| || || |||| ||||||||| |||| ||||||||||| ||| || | |||||| |||||||| || |||||||| ||||||||||||||| |
|
|
| T |
25345691 |
ggctctgacggcttagataactcagaagctaaaaactcccatttaacaataagttgtttaggcaaaatgtgtttcaaatgtttcggcttatatttcacaa |
25345790 |
T |
|
| Q |
320 |
aacaatttggacttggacacatcactttaagtggattttcattgatttcaacttctacatacttgcatatgcattcaacacaaaaga |
406 |
Q |
| |
|
|||||||||||||||| |||| || || | ||| ||||| |||| |||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
25345791 |
aacaatttggacttgggcacaaaaccttgtaagcattatcattaatttgaacttctacatacttgcaaatgcagtcaacacaaaaga |
25345877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 25339690 - 25339746
Alignment:
| Q |
358 |
tcattgatttcaacttctacatacttgcatatgcattcaacacaaaagaagtgcttg |
414 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
25339690 |
tcattaatttgaacttctacatacttgcaaatgcagtcaacacaaaagaggtgcttg |
25339746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 21788125 - 21788187
Alignment:
| Q |
276 |
tttaggtaaaatgtgattaaaatgttttggcttatatttcacacaacaatttggacttggaca |
338 |
Q |
| |
|
||||||||||||||| | || ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
21788125 |
tttaggtaaaatgtgttgcaattgttttggcttcaatttcacagaacaatttggacttggaca |
21788187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University