View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13567_low_7 (Length: 248)
Name: NF13567_low_7
Description: NF13567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13567_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 30911216 - 30911054
Alignment:
| Q |
76 |
gagaaaactaaaccaaattgaaccaaaccacaaaaacagttactgaaaattgaaccaaattgcaattttttcacttgaatcaaaattaacaagttttata |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
30911216 |
gagaaaactaaaccaaattgaaccaaaccacaaaaacagttactgaaaattgaaccaaattgcaattttttcacttgaatcaaaattaactaattttata |
30911117 |
T |
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| Q |
176 |
tgcatcggttcactatgatttcaaagctgggctgatttttaccgatttcattttttgtatttt |
238 |
Q |
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| T |
30911116 |
tgcatcggttcactatgatttcaaagctgggctgatttttaccgatttcattttttgtatttt |
30911054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30911319 - 30911252
Alignment:
| Q |
1 |
atgaacgttatatgtcagtgtgactaacatacttatcaagttgatggaacattcataatcataagttc |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30911319 |
atgaacgttatatgtcagtgtgactaacatacttatcaagtttgtggaacattcataatcataagttc |
30911252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 41916981 - 41916921
Alignment:
| Q |
89 |
caaattgaaccaaaccacaaaaacagttactgaaaattgaaccaaattgcaattttttcac |
149 |
Q |
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||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
41916981 |
caaattgaaccgaaccacaaaaactgtttgtgaaaattgaaccaaattgcaattttttcac |
41916921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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