View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13568_high_1 (Length: 609)
Name: NF13568_high_1
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13568_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 3 - 592
Target Start/End: Original strand, 42140127 - 42140716
Alignment:
| Q |
3 |
atcaggagcacagtagaacttaatagctgaactacttctccaactatttaaattaatatgggtatgacattgcacaatataatctaagttatcagcataa |
102 |
Q |
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| T |
42140127 |
atcaggagcacagtagaacttaatagttgaactacttctccaactatttaaattaatatgggtatgacattgcacaatataatctaagttatcagcataa |
42140226 |
T |
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| Q |
103 |
acaagtcaaccagcccaaggatgctaaagtttgataagagccattaaggcatataaaagttgacctataagtagcaacgtgatcatagaaatgctaagct |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
42140227 |
acaagtcaaccagcccaaggatgctaaagtttgataagagccattaaggcatataaaagttgacctataagtagcgacatgatcatagaaatgctaagct |
42140326 |
T |
|
| Q |
203 |
aaactaatcaagaatgcaatcaatctatcaaagtaagcaatcagtcaataattgacgatcgctattatatactcaattaaactgtagttctattatttct |
302 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
42140327 |
aaacaaatcaagaatgcaatcaatctatcaaagtaagcaatcagtccataattgacgatcgctattatctactcaattaaactctagttctattatttct |
42140426 |
T |
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| Q |
303 |
tggtacatctagataccacgagtattcttttccagagtaagattcagacagactttaattgagtatgcactatggagaagaaaactcaagccatctagat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42140427 |
tggtacatctagataccacgagtattcttttccagagtaagattcagacagactttaattgagtatgcactatggagaagaaaactcaagccatctagat |
42140526 |
T |
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| Q |
403 |
gttccaaagttatcaaggattgtcactaaacatgctaaattcaatatgcactttgataaattggaagtacaactaggacacttccaatcatactaaccac |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42140527 |
gttccaaagttatcaaggattgtcactaaacatgctaaattcaatatgcactttgataaattggaagtacaactaggacacttccaatcatactaaccac |
42140626 |
T |
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| Q |
503 |
cttgctaatatagtatagcataaccaaatcattaacaatccatcacctcgatgttggccaaatcgttggtccgatatagctccctgctca |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42140627 |
cttgctaatatagtatagcataaccaaatcattaacaatccatcacctcgattttggccaaatcgttggtccgatatagctccctgctca |
42140716 |
T |
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