View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13568_high_11 (Length: 223)
Name: NF13568_high_11
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13568_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 31183695 - 31183882
Alignment:
| Q |
21 |
agtggcaatcttttgaatggaaaaataccaacagctcttgaagacttggtgcagttgtcaatgttgaatctctcacacaatatgctttcaggaaccattc |
120 |
Q |
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| T |
31183695 |
agtggcaatcttttgaatggaaaaataccaacagctcttgaagacttggtgcagttgtcaatgttgaatctctcacacaatatgctttcaggaaccattc |
31183794 |
T |
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| Q |
121 |
ctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccagcttttcttct |
208 |
Q |
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| T |
31183795 |
ctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccagcttttcttct |
31183882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 31058171 - 31058356
Alignment:
| Q |
21 |
agtggcaatcttttgaatggaaaaataccaacagctcttgaagacttggtgcagttgtcaatgttgaatctctcacacaatatgctttcaggaaccattc |
120 |
Q |
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| T |
31058171 |
agtggcaattttttgaaaggaaatataccaacaggtcttgcagacttggtgcggttgtcaaagttgaatctctcacataatatgctttcaggaaccattc |
31058270 |
T |
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| Q |
121 |
ctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccagcttttctt |
206 |
Q |
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| T |
31058271 |
ctcaaaattttggaaggaatttggtttttgttaatatatcagacaaccagttagaaggtccactaccaaaaattccggcttttctt |
31058356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 31102603 - 31102792
Alignment:
| Q |
18 |
cttagtggcaatcttttgaatggaaaaataccaacagctcttgaagacttggtgcagttgtcaatgttgaatctctcacacaatatgctttcaggaacca |
117 |
Q |
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| T |
31102603 |
cttagtggcaatcgtttgaatggaaacataccaacaagtctcggattcttggtgcagttgtcaatgttgaatctctcacataatatgctttcaggaacca |
31102702 |
T |
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| Q |
118 |
ttcctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccagcttttcttc |
207 |
Q |
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| T |
31102703 |
ttccttcaacttttagtatgagtttggattttgttaacatatcagacaaccagttagatggtccacttccagaaaatccagcttttcttc |
31102792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 31139977 - 31140166
Alignment:
| Q |
18 |
cttagtggcaatcttttgaatggaaaaataccaacagctcttgaagacttggtgcagttgtcaatgttgaatctctcacacaatatgctttcaggaacca |
117 |
Q |
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|||||||| |||| |||||||||||| |||||| | ||||| | ||||| |||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
31139977 |
cttagtggaaatcgtttgaatggaaagataccagaaattcttggattcttgggtcagttgtcaatgttgaatctctcacataatatgctttcaggcacca |
31140076 |
T |
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| Q |
118 |
ttcctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccagcttttcttc |
207 |
Q |
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||||| | || | | || ||||| ||||||||| |||||| |||| ||||||||||| || ||||| | | |||||||||||||| |
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| T |
31140077 |
ttccttcattttctagtatgagtttggattttgttaacatatcaaacaatcagttagaagggccgcttccggacaatccagcttttcttc |
31140166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 31152995 - 31153184
Alignment:
| Q |
18 |
cttagtggcaatcttttgaatggaaaaataccaacagctcttgaagacttggtgcagttgtcaatgttgaatctctcacacaatatgctttcaggaacca |
117 |
Q |
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|||||||| |||| |||||||||||| ||||||| | ||||| | |||| |||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
31152995 |
cttagtggaaatcgtttgaatggaaagataccaaaaattcttggattcttgagtcagttgtcaatgttgaatctctcacataatatgctttcaggcacca |
31153094 |
T |
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| Q |
118 |
ttcctcaaaattttgaaaggaatttggtttttgttaatatatcagacaaccagttagaaggcccacttcctaaaattccagcttttcttc |
207 |
Q |
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| T |
31153095 |
ttccttcattttctaggatgagtttggattttgttaacatatcagacaatcagttagaagggcggcttccggacaatccagcttttcttc |
31153184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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