View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13568_low_10 (Length: 236)

Name: NF13568_low_10
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13568_low_10
NF13568_low_10
[»] chr2 (5 HSPs)
chr2 (1-222)||(16676316-16676537)
chr2 (31-135)||(34811112-34811215)
chr2 (40-110)||(7451317-7451387)
chr2 (37-98)||(28197102-28197163)
chr2 (38-82)||(42261382-42261426)
[»] chr7 (4 HSPs)
chr7 (4-221)||(43363331-43363549)
chr7 (43-110)||(1360075-1360142)
chr7 (54-217)||(14301374-14301537)
chr7 (40-118)||(22328289-22328367)
[»] chr8 (3 HSPs)
chr8 (14-118)||(11137217-11137321)
chr8 (14-118)||(3772382-3772485)
chr8 (40-92)||(10240341-10240393)
[»] chr3 (4 HSPs)
chr3 (4-118)||(5270563-5270678)
chr3 (16-111)||(35138577-35138672)
chr3 (14-118)||(20937848-20937952)
chr3 (40-135)||(50432543-50432636)
[»] chr4 (5 HSPs)
chr4 (31-221)||(6199757-6199950)
chr4 (31-118)||(3786153-3786240)
chr4 (40-115)||(12073586-12073661)
chr4 (40-118)||(12119735-12119813)
chr4 (40-100)||(41961607-41961667)
[»] chr5 (4 HSPs)
chr5 (4-116)||(316956-317071)
chr5 (14-108)||(10054688-10054782)
chr5 (40-110)||(10700548-10700618)
chr5 (40-92)||(8038415-8038467)
[»] chr1 (6 HSPs)
chr1 (44-157)||(38746617-38746729)
chr1 (4-118)||(9109281-9109396)
chr1 (40-122)||(25701030-25701112)
chr1 (16-98)||(22079523-22079605)
chr1 (4-118)||(41136010-41136119)
chr1 (14-118)||(25652276-25652380)
[»] chr6 (2 HSPs)
chr6 (31-110)||(5739884-5739963)
chr6 (31-92)||(11660820-11660881)
[»] scaffold0002 (1 HSPs)
scaffold0002 (38-82)||(490217-490261)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16676537 - 16676316
Alignment:
Q  1 acgaccaataacaaaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  16676537 acgaccaataacaaaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtgtaaatcaaaaccacaatcgaaccaaagaacaaac 16676438  T
Q  101 tagataaagaaagtagagtatatagaataacacactaaagatttattcacccaattcgaccaaacaatgttctagatctggaggagagcgttctttccac 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  16676437 tagataaagaaagtagagtatatagaataacacactaaaaatttgttcacccagttcgaccaaacaatgacctagatctggaggagagcgttctttccac 16676338  T
Q  201 tgcactatcaatgagttatttg 222  Q
    | ||||||||||||||||||||    
T  16676337 tccactatcaatgagttatttg 16676316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 34811112 - 34811215
Alignment:
Q  31 caacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaagtagagtatatagaataa 130  Q
    ||||| |||||||||||||||||||||||| || | ||||  ||||| |||| ||||| ||||||| ||| ||||||||| ||||||  ||| |||| ||    
T  34811112 caacaacatatctagatctaatctagcaactaattgtaaagtaaaactacaaccgaataaaagaac-aacaagataaagagagtagaaaatagagaacaa 34811210  T
Q  131 cacac 135  Q
    |||||    
T  34811211 cacac 34811215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 7451387 - 7451317
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaaga 110  Q
    ||||||||||||||||| ||  ||||  | | |||||||||||||||| ||||||| |||| |||||||||    
T  7451387 atctagatctaatctagaaaacaagtgcataacaaaaccacaatcgaaccaaagaataaacaagataaaga 7451317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 28197163 - 28197102
Alignment:
Q  37 catatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaa 98  Q
    ||||||||||| | |||||||||| |||| |||| |||| | ||||| ||||||||||||||    
T  28197163 catatctagattttatctagcaaccaagtgtaaagcaaaccaacaattgaatcaaagaacaa 28197102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 42261382 - 42261426
Alignment:
Q  38 atatctagatctaatctagcaacaaagtataaatcaaaaccacaa 82  Q
    ||||||||||||||||||||||| |||| || | |||||||||||    
T  42261382 atatctagatctaatctagcaaccaagtgtatagcaaaaccacaa 42261426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 43363331 - 43363549
Alignment:
Q  4 accaataacaaaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatca-aaaccacaatcgaatcaaagaacaaacta 102  Q
    ||||||||| ||||| |||||| | | ||| | || |||||||||||||||| |||| |  |  ||| || |||||||||||||| |||||||||||| |    
T  43363331 accaataactaaaatgaccacaagcaacaataacaaatctagatctaatctaacaactatttgcaaagcacaaaccacaatcgaaccaaagaacaaacaa 43363430  T
Q  103 gataaagaaagtagagtatatagaataacacactaaagatttattcacccaattcgaccaaacaatgttctagatctggaggagagcgttctttccactg 202  Q
    |||||||| |||||||| || |||| ||| ||| ||  |||| ||| || | || | || |||||||  | | || |||||||||| | ||| ||||||     
T  43363431 gataaagagagtagagtgtagagaacaactcaccaagaatttgttcccctagtttggcccaacaatgaccaacatatggaggagagagatctatccactt 43363530  T
Q  203 cactatcaatgagttattt 221  Q
    |||||||||||||||||||    
T  43363531 cactatcaatgagttattt 43363549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 1360075 - 1360142
Alignment:
Q  43 tagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaaga 110  Q
    |||||||||||||  ||| |||| |||| ||||||||||||||||  |||||| |||| |||||||||    
T  1360075 tagatctaatctaaaaactaagtgtaaagcaaaaccacaatcgaacaaaagaagaaacaagataaaga 1360142  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 217
Target Start/End: Original strand, 14301374 - 14301537
Alignment:
Q  54 tagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaagtagagtatatagaataacacactaaagatttattcaccca 153  Q
    ||||||| |||| | || ||||| ||||||| |||||||||| || | ||||||||| ||||||||||| | || || | ||||| ||||| ||||||||    
T  14301374 tagcaactaagtgtcaagcaaaatcacaatcaaatcaaagaataa-caagataaagagagtagagtatagaaaacaatatactaaggatttgttcaccca 14301472  T
Q  154 attcgaccaaacaatgttc--tagatctggaggagagcgttctttccactgcactatcaatgagtt 217  Q
     |||| || || || ||||  || || |||||||||| ||||| |||||  |||||||||| ||||    
T  14301473 gttcggcctaataa-gttctttacatatggaggagagagttctctccacctcactatcaataagtt 14301537  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 22328289 - 22328367
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaagtagag 118  Q
    |||||||||||||| || ||| ||||  | | ||||||||||||||||  |||||| |||| ||||||||| |||||||    
T  22328289 atctagatctaatcgagaaaccaagtgcataacaaaaccacaatcgaacaaaagaataaacaagataaagagagtagag 22328367  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 11137321 - 11137217
Alignment:
Q  14 aaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaag 113  Q
    |||||||||||| | | ||| | |||||||| ||||||||||||||  |||||||||  ||||||||||||||| ||| ||| |||| ||||||||| ||    
T  11137321 aaaataaccacaagcaacaataacatatctaaatctaatctagcaatcaagtataaagaaaaaccacaatcgaaccaatgaataaacaagataaagagag 11137222  T
Q  114 tagag 118  Q
    |||||    
T  11137221 tagag 11137217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 3772485 - 3772382
Alignment:
Q  14 aaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaag 113  Q
    |||||||||||| | | ||||| || |||||||| |||||||| ||  ||||  | | ||||||||||||| || ||||||| |||| ||||||||| ||    
T  3772485 aaaataaccacaagcaacaacaaca-atctagatttaatctagaaatcaagtgcatagcaaaaccacaatctaaccaaagaataaacaagataaagagag 3772387  T
Q  114 tagag 118  Q
    |||||    
T  3772386 tagag 3772382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 10240393 - 10240341
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaa 92  Q
    ||||||||||||||||| ||| || | |||| |||||||||||||||| ||||    
T  10240393 atctagatctaatctagaaacgaaatgtaaagcaaaaccacaatcgaaccaaa 10240341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 5270678 - 5270563
Alignment:
Q  4 accaataacaaaaataa-ccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaacta 102  Q
    |||||||||||||| || ||||| | | |||||  | ||||||||||||||||||||| |||| |||  |||||||||||||||| ||||||| ||||      
T  5270678 accaataacaaaaaaaaaccacaagcaacaacaatagatctagatctaatctagcaaccaagtgtaatgcaaaaccacaatcgaaccaaagaataaacat 5270579  T
Q  103 gataaagaaagtagag 118  Q
    |||||||| |||||||    
T  5270578 gataaagagagtagag 5270563  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 35138577 - 35138672
Alignment:
Q  16 aataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaa 111  Q
    |||||||||| | | ||||| ||||| |||||| ||||||||||  | || |||| |||||||||||||||| ||||||| |||| ||||||||||    
T  35138577 aataaccacaagcaacaacaacatatttagatccaatctagcaattaggtgtaaaacaaaaccacaatcgaaccaaagaataaaccagataaagaa 35138672  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 20937952 - 20937848
Alignment:
Q  14 aaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaag 113  Q
    |||||||| ||| | ||||||| || ||||||||||||||||  ||  |||| ||||  |||| |||||||||| |||| || |||| ||||||||| ||    
T  20937952 aaaataactacaagcagcaacaacaaatctagatctaatctattaatcaagtgtaaagtaaaatcacaatcgaaccaaataataaacaagataaagagag 20937853  T
Q  114 tagag 118  Q
    |||||    
T  20937852 tagag 20937848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 50432543 - 50432636
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaagtagagtatatagaataacacac 135  Q
    ||||||||| ||||||||||| ||||  ||| ||||||||||||| || ||||||   ||| ||||||||| ||||||| ||| |||| |||||||    
T  50432543 atctagatccaatctagcaacgaagtggaaagcaaaaccacaatcaaaccaaaga--caacaagataaagagagtagagaatagagaacaacacac 50432636  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 6199757 - 6199950
Alignment:
Q  31 caacatcatatctagatctaatctagcaacaaagtataaatca-aaaccacaatcgaatcaaagaacaaactagataaagaaagtagagtatatagaata 129  Q
    ||||| || |||||||||||||||| |||| || |  ||| || |||||||||||||| |||||||||||| ||||||||| |||| || ||| |||| |    
T  6199757 caacaacaaatctagatctaatctaacaactaattgcaaagcacaaaccacaatcgaaccaaagaacaaacaagataaagagagtaaaggatagagaaca 6199856  T
Q  130 acacactaaagatttattcacccaattcgaccaaacaatgttc--tagatctggaggagagcgttctttccactgcactatcaatgagttattt 221  Q
    || ||| ||  |||| |||||| | || |||| |||||||  |   | || |||||||||| | ||| |||||| |||||||||||||||||||    
T  6199857 actcaccaagaatttgttcacctagtttgacccaacaatgaccaacacatatggaggagaggggtctctccacttcactatcaatgagttattt 6199950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 3786240 - 3786153
Alignment:
Q  31 caacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaagtagag 118  Q
    ||||| |||||||||||||||| ||||||| |||| |||| |||||  ||||||||| |||||||  ||| ||||||||| |||||||    
T  3786240 caacaacatatctagatctaatatagcaaccaagtgtaaaacaaaattacaatcgaaccaaagaatgaacaagataaagagagtagag 3786153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 12073661 - 12073586
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaagta 115  Q
    ||||||||||||||||| ||| ||||  | | ||||||||||||| || ||||||| |||| ||||||||| ||||    
T  12073661 atctagatctaatctagaaaccaagtgcataacaaaaccacaatctaaccaaagaataaacaagataaagagagta 12073586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 12119813 - 12119735
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaagtagag 118  Q
    ||||||||||||||||| ||| ||||  | | |||||||||||||| | ||||||  |||| ||||||||| |||||||    
T  12119813 atctagatctaatctagaaactaagtgcatagcaaaaccacaatcggaccaaagactaaacaagataaagagagtagag 12119735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 41961667 - 41961607
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaac 100  Q
    ||||||||||||||||| ||| | || |||| ||||||||||||| || ||||||| ||||    
T  41961667 atctagatctaatctagtaaccaggtttaaagcaaaaccacaatcaaaccaaagaataaac 41961607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 317071 - 316956
Alignment:
Q  4 accaataacaaaaataaccacagggagcaacatc---atatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaac 100  Q
    ||||||||| |||||||||||| | | ||||| |   | |||||||||| |||||||||| |||| |||| |||||||||||| ||| ||||||| ||||    
T  317071 accaataaccaaaataaccacaagcaacaacaacgacagatctagatcttatctagcaaccaagtgtaaagcaaaaccacaattgaaccaaagaataaac 316972  T
Q  101 tagataaagaaagtag 116  Q
     | ||||||| |||||    
T  316971 aaaataaagagagtag 316956  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 10054688 - 10054782
Alignment:
Q  14 aaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaa 108  Q
    |||||||||||| | | || || || ||||||||||||||||||||| |||| |||| |||||  ||||||||| |||| || |||| |||||||    
T  10054688 aaaataaccacatgcaacatcaacaaatctagatctaatctagcaaccaagtgtaaagcaaaattacaatcgaagcaaaaaataaacaagataaa 10054782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 10700548 - 10700618
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaaga 110  Q
    ||||| || ||||||| |||  |||| |||||||||||||||||| |||||||||| || | |||||||||    
T  10700548 atctatatttaatctaacaatcaagtgtaaatcaaaaccacaatcaaatcaaagaataagcaagataaaga 10700618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 8038467 - 8038415
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaa 92  Q
    |||| |||||||||||||||| |||| ||||  ||||||||||||||| ||||    
T  8038467 atcttgatctaatctagcaaccaagtgtaaagaaaaaccacaatcgaaccaaa 8038415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 38746617 - 38746729
Alignment:
Q  44 agatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaagtagagtatatagaataacacactaaagatt 143  Q
    |||||||| |||||||  || | |||| | ||| |||||| |||||||||||||| | ||||||||| |||| ||||||||||| ||||||| || ||||    
T  38746617 agatctaaactagcaatcaactgtaaagccaaatcacaattgaatcaaagaacaa-caagataaagagagtatagtatatagaacaacacaccaaggatt 38746715  T
Q  144 tattcacccaattc 157  Q
    | |||||| |||||    
T  38746716 tgttcaccaaattc 38746729  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 9109281 - 9109396
Alignment:
Q  4 accaataacaaaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaac-ta 102  Q
    ||||||||| |||||||||||| | |  |||| || |||||||||||| |||||||| || | | || || |||||||||| || ||||||| ||||  |    
T  9109281 accaataactaaaataaccacaagtaataacaacagatctagatctaagctagcaaccaactgtgaagcataaccacaatcaaaccaaagaataaacaaa 9109380  T
Q  103 gataaagaaagtagag 118  Q
    |||||||| |||||||    
T  9109381 gataaagagagtagag 9109396  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 25701030 - 25701112
Alignment:
Q  40 atctagatctaatctagcaacaaagtataaatca-aaaccacaatcgaatcaaagaacaaactagataaagaaagtagagtata 122  Q
    ||||||||| ||||||||||| ||||||||| || ||||||||| |||| |||| ||  ||| ||||||||| |||||||||||    
T  25701030 atctagatcgaatctagcaaccaagtataaagcacaaaccacaaccgaaccaaa-aaataacaagataaagagagtagagtata 25701112  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 22079605 - 22079523
Alignment:
Q  16 aataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaa 98  Q
    |||||||||| | | ||||| | ||||||||||||||| | |||  |||| |||| |||||| ||||| ||||||||||||||    
T  22079605 aataaccacaagcaacaacaacttatctagatctaatcaaacaaacaagtgtaaagcaaaacaacaattgaatcaaagaacaa 22079523  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 41136119 - 41136010
Alignment:
Q  4 accaataacaaaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactag 103  Q
    ||||||||| |||||||||||| | | ||||| ||| | |||||||||||||||    |||| |||| ||||| |||||  |||||||||||  ||| ||    
T  41136119 accaataaccaaaataaccacaagtaacaacaacatgtatagatctaatctagc----aagtgtaaagcaaaatcacaactgaatcaaagaa-taacaag 41136025  T
Q  104 ataaagaaagtagag 118  Q
    ||||||| |||||||    
T  41136024 ataaagagagtagag 41136010  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 25652380 - 25652276
Alignment:
Q  14 aaaataaccacagggagcaacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaagaaag 113  Q
    ||||||| |||| | | ||||| || || |||||||||||||||||| |||| |||| ||||||||||  | || |||| || |||| | ||||||| ||    
T  25652380 aaaataatcacaagtaacaacaacaaatttagatctaatctagcaactaagtgtaaagcaaaaccacaggcaaaccaaataataaacaaaataaagagag 25652281  T
Q  114 tagag 118  Q
    |||||    
T  25652280 tagag 25652276  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 5739884 - 5739963
Alignment:
Q  31 caacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaagaacaaactagataaaga 110  Q
    ||||| |||||||| ||||||||||||||| |||| |||| |||||||||||  ||||||||| | |||  |||||||||    
T  5739884 caacaacatatctaaatctaatctagcaaccaagtgtaaagcaaaaccacaactgaatcaaagcataaataagataaaga 5739963  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 11660881 - 11660820
Alignment:
Q  31 caacatcatatctagatctaatctagcaacaaagtataaatcaaaaccacaatcgaatcaaa 92  Q
    ||||| || ||||||||||||||||||||| |||| |||| |||||||||| | ||||||||    
T  11660881 caacaacagatctagatctaatctagcaaccaagtgtaaagcaaaaccacatttgaatcaaa 11660820  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 490217 - 490261
Alignment:
Q  38 atatctagatctaatctagcaacaaagtataaatcaaaaccacaa 82  Q
    ||||||||||||||||||||||| |||| || | |||||||||||    
T  490217 atatctagatctaatctagcaaccaagtgtatagcaaaaccacaa 490261  T

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