View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13568_low_13 (Length: 218)

Name: NF13568_low_13
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13568_low_13
NF13568_low_13
[»] chr7 (5 HSPs)
chr7 (1-216)||(10575396-10575611)
chr7 (80-195)||(354435-354550)
chr7 (36-156)||(39954838-39954958)
chr7 (80-207)||(10580805-10580927)
chr7 (23-63)||(10580932-10580972)
[»] chr8 (1 HSPs)
chr8 (25-210)||(14261014-14261199)
[»] chr3 (7 HSPs)
chr3 (31-210)||(24982061-24982240)
chr3 (34-210)||(24497250-24497426)
chr3 (24-210)||(21584578-21584764)
chr3 (31-210)||(25085053-25085232)
chr3 (31-210)||(24923448-24923627)
chr3 (34-207)||(31825548-31825721)
chr3 (34-210)||(24919877-24920053)
[»] chr4 (3 HSPs)
chr4 (53-207)||(22898571-22898725)
chr4 (53-207)||(22950239-22950393)
chr4 (36-156)||(53328783-53328903)
[»] chr2 (2 HSPs)
chr2 (59-174)||(41027623-41027738)
chr2 (44-141)||(30012097-30012194)
[»] chr5 (1 HSPs)
chr5 (44-141)||(26358549-26358646)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 10575611 - 10575396
Alignment:
Q  1 cccataacaattacacaaaaaacttcatcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10575611 cccataacaattacacaaaaaacttcatcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtc 10575512  T
Q  101 acagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10575511 acagttttcctcctcgcatgctcagtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatc 10575412  T
Q  201 cactgattcttctcac 216  Q
    ||||||||||| ||||    
T  10575411 cactgattcttttcac 10575396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 354550 - 354435
Alignment:
Q  80 taaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctc 179  Q
    |||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |  ||| |||||| |||||| ||||||||||| ||||    
T  354550 taaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctc 354451  T
Q  180 ttgtttcctcatagat 195  Q
    || |||||||||||||    
T  354450 ttatttcctcatagat 354435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 39954838 - 39954958
Alignment:
Q  36 aaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaac 135  Q
    ||||||||||||| ||||| || ||||| || ||||| || || || ||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  136 agcatctcttatcacattctc 156  Q
    |||||| |  |||||||||||    
T  39954938 agcatcacgaatcacattctc 39954958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 10580927 - 10580805
Alignment:
Q  80 taaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctc 179  Q
    |||||||||||||||||||| | ||| ||||||     ||||||||||||||||||||||||    |||  ||||| |||||| ||||||||||  ||||    
T  10580927 taaacaacatccatagcagtcagagtcttcctc-----atgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctc 10580833  T
Q  180 ttgtttcctcatagatcaatccactgat 207  Q
    || |||||||||||||||| ||||||||    
T  10580832 ttatttcctcatagatcaaaccactgat 10580805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 10580972 - 10580932
Alignment:
Q  23 cttcatcatcttcaaccaccgaaaccatagagggttcttcc 63  Q
    ||||||| |||||| ||||| ||||||||||||||||||||    
T  10580972 cttcatcttcttcatccaccaaaaccatagagggttcttcc 10580932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 14261014 - 14261199
Alignment:
Q  25 tcatcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctca 124  Q
    ||||| ||||||||| ||||||||||| |  || |||||||||||||| | ||| ||||||||||||||||||||||| || |||||||||||||| |||    
T  14261014 tcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttca 14261113  T
Q  125 gtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 210  Q
    || || |||||||||||||||||||||||||||||||| |||||||||||||| |  ||||| ||||| ||||| || ||||||||    
T  14261114 gtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattct 14261199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 24982240 - 24982061
Alignment:
Q  31 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaa 130  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || || ||||||||||| || |||||||| |||||||| || |||||||||||     
T  24982240 tcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtat 24982141  T
Q  131 gtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 210  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||    
T  24982140 gtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattct 24982061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 24497250 - 24497426
Alignment:
Q  34 tcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagta 133  Q
    |||||| || ||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| || ||||||||||| |||    
T  24497250 tcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgta 24497349  T
Q  134 acagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 210  Q
    || ||||| |  |||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  24497350 actgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattct 24497426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 21584578 - 21584764
Alignment:
Q  24 ttcatcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctc 123  Q
    |||||| ||||||||| ||||| ||||| || ||||||||||| ||||| |  || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  21584578 ttcatcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctc 21584677  T
Q  124 agtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 210  Q
    |||||| ||||| ||||| |  ||||||||||||||||| ||||| |  || ||||||||||||||||| ||||| |||||||||||    
T  21584678 agtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattct 21584764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 25085232 - 25085053
Alignment:
Q  31 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaa 130  Q
    ||||||||| || |||||||||||||||||||| |||||||| |  || || ||||||||||| || || ||||| |||||||| || |||||||||||     
T  25085232 tcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtat 25085133  T
Q  131 gtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 210  Q
    ||||| ||||| |  |||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||    
T  25085132 gtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattct 25085053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 24923448 - 24923627
Alignment:
Q  31 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaa 130  Q
    ||||||||| || || ||||||||||||||||| |||||||| |  || || ||||||||||| || || || || |||||||| || |||||||||||     
T  24923448 tcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtat 24923547  T
Q  131 gtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 210  Q
    || |||||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||    
T  24923548 gtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattct 24923627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 31825548 - 31825721
Alignment:
Q  34 tcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagta 133  Q
    |||||| ||||| ||||||||||||||||| || ||||| |  || || ||||||||||| || ||||| || |||||||| || ||||||||||| ||     
T  31825548 tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtg 31825647  T
Q  134 acagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgat 207  Q
    || ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  31825648 accgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgat 31825721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 24919877 - 24920053
Alignment:
Q  34 tcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagta 133  Q
    |||||| ||||| ||||||||||||||||| || ||||| |  || || || |||||||| || || || || |||||||| || ||||||||||| ||     
T  24919877 tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtc 24919976  T
Q  134 acagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 210  Q
    |||||||| |  || |||||||| |||||||||||||| |||||||| ||||| ||||||||||| || ||||||||    
T  24919977 acagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattct 24920053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 22898725 - 22898571
Alignment:
Q  53 agggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacat 152  Q
    ||||||||||| |||||||| || || ||||| ||||||||||||||||| || ||||| || || |||||||||||||| ||||||||||| |||||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  153 tctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgat 207  Q
    ||||||| || ||||||||||| || | ||| |||||||| ||||| ||||||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 22950393 - 22950239
Alignment:
Q  53 agggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacat 152  Q
    ||||||||||| |||||||| || || ||||| ||||||||||||||||| || ||||| || || |||||||||||||| ||||||||||| |||||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  153 tctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgat 207  Q
    ||||||| || ||||||||||| || | ||| |||||||| ||||| ||||||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22950239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 53328903 - 53328783
Alignment:
Q  36 aaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaac 135  Q
    |||| |||||||| || || || ||||| || ||||| || ||||||||||||||||| ||||||||||| || |  |  |||||||| ||||| || ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  136 agcatctcttatcacattctc 156  Q
    |||||| |  |||||||||||    
T  53328803 agcatcacgaatcacattctc 53328783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 41027738 - 41027623
Alignment:
Q  59 cttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacattctcca 158  Q
    |||||||||||||| |  || |||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||| |  || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  159 agaagatcttcaacac 174  Q
    | ||||||||||||||    
T  41027638 aaaagatcttcaacac 41027623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 30012194 - 30012097
Alignment:
Q  44 aaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatc 141  Q
    |||||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||| || || || |  |  || || ||||||||||||||||||||    
T  30012194 aaaccataaagggtccttccttgcctcttgagcgcataaaccacatccatagcagtcactgtcttgcgacgagcgtgttcagtgtaagtaacagcatc 30012097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 26358549 - 26358646
Alignment:
Q  44 aaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatc 141  Q
    |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |  |  ||||| ||||||||||| ||||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatc 26358646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University