View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13568_low_2 (Length: 576)

Name: NF13568_low_2
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13568_low_2
NF13568_low_2
[»] chr8 (6 HSPs)
chr8 (1-559)||(14003833-14004391)
chr8 (1-559)||(5766413-5766971)
chr8 (311-412)||(17635611-17635712)
chr8 (237-367)||(18314638-18314768)
chr8 (311-412)||(17642890-17642991)
chr8 (240-277)||(17643025-17643062)
[»] chr4 (10 HSPs)
chr4 (62-183)||(1481511-1481632)
chr4 (240-409)||(8186317-8186486)
chr4 (352-507)||(1481684-1481836)
chr4 (66-181)||(8186539-8186654)
chr4 (308-400)||(661855-661947)
chr4 (115-177)||(532630-532692)
chr4 (134-188)||(7225324-7225378)
chr4 (236-276)||(12124517-12124557)
chr4 (138-178)||(21833493-21833533)
chr4 (308-408)||(55907634-55907734)
[»] chr6 (5 HSPs)
chr6 (329-412)||(7132323-7132406)
chr6 (329-412)||(7135246-7135329)
chr6 (329-412)||(7138169-7138252)
chr6 (261-369)||(6403528-6403636)
chr6 (308-412)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (308-408)||(1036570-1036670)
[»] chr1 (3 HSPs)
chr1 (237-393)||(7555124-7555280)
chr1 (138-183)||(19467627-19467672)
chr1 (471-504)||(30827961-30827994)
[»] chr5 (1 HSPs)
chr5 (240-343)||(29021726-29021829)


Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 14003833 - 14004391
Alignment:
Q  1 ttggtttctggcggagagcaagatcaatgcctgcgacggttaattgttcacatctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtg 100  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14003833 ttggtctctggcggagagcaagatcaacgcctgcgacggttaattgttcacatctaagcaagatgacatcttggagaaacttgcagttcttgaacaagtg 14003932  T
Q  101 agaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003933 agaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggta 14004032  T
Q  201 gcacgtgtgtgattaatgattttagaggggtaagcgaggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagag 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004033 gcatgtgtgtgattaatgattttagaggggtaagcgaggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagag 14004132  T
Q  301 aattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14004133 aattaaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgag 14004232  T
Q  401 cgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaac 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004233 cgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaac 14004332  T
Q  501 ctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaattt 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004333 ctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaattt 14004391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 5766971 - 5766413
Alignment:
Q  1 ttggtttctggcggagagcaagatcaatgcctgcgacggttaattgttcacatctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtg 100  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766971 ttggtttctggaggagagcaagatcaacgcctgcgatggttaattgttcacatctaagcaagatgacctcttggagaaacttgcagttcttgaacaagtg 5766872  T
Q  101 agaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766871 agaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtccagtggagaaggta 5766772  T
Q  201 gcacgtgtgtgattaatgattttagaggggtaagcgaggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagag 300  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||| |||| |||||||||||||||||    
T  5766771 gcatgtgtgtgattaatgattttagaggggtaagcgaggtcaagttcttctagcaaaggaaaagtatcagcaatgaggtggatatcagtgctattaagag 5766672  T
Q  301 aattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 400  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766671 aaataaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 5766572  T
Q  401 cgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaac 500  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  5766571 cgatgtgagtttcaacattgggaagctagagatttgagtaagaagtgcatctaggtcaccgtaatagtacgagaggtcgagggaggtgagtttggtgaac 5766472  T
Q  501 ctttgtaataggccagggaggacaggtagggttggatacaagatagttagacagaattt 559  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5766471 ctttgtaataggccagggaggacaggtagggctggatacaagatagttagacagaattt 5766413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 17635712 - 17635611
Alignment:
Q  311 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 410  Q
    ||||||| | || ||||||||||||||||| ||||| ||||||||||| || |||||||  |||| | ||||||||||||| |||||||| ||| |||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  411 tt 412  Q
    ||    
T  17635612 tt 17635611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 237 - 367
Target Start/End: Complemental strand, 18314768 - 18314638
Alignment:
Q  237 aggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttg 336  Q
    |||||||||||||| |||||||| |||||||||||||||||   ||||||||||| ||  ||||| | || ||  |||||    ||||||||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatcagtgccatggagagattgaatgtaagaacatgagagtgaggtcaaagttg 18314669  T
Q  337 taatgttccgagagaaagctcgcaaaccatt 367  Q
    |||| ||  |||||||| |||| || |||||    
T  18314668 taatattttgagagaaaactcgtaagccatt 18314638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 17642991 - 17642890
Alignment:
Q  311 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 410  Q
    ||||||| | || ||||||||||||||||| ||| | ||||||||| | || ||||| |  |||| | |||| |||||||| |||||||| |||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagt 17642892  T
Q  411 tt 412  Q
    ||    
T  17642891 tt 17642890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 17643062 - 17643025
Alignment:
Q  240 tcgagttcttctagcaaaggaaaacaatcagcaatgag 277  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  17643062 tcgagttcttctagcaaagggaaacaatcagcgatgag 17643025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 1481511 - 1481632
Alignment:
Q  62 gatgacctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatg 161  Q
    |||||||| || |||||||||||||||||||||||| ||| |||||||| || |||||| ||||  ||||| ||||||||||| |||||||||||||| |    
T  1481511 gatgaccttttcgagaaacttgcagttcttgaacaattgaaaaagcaaaatgtcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaag 1481610  T
Q  162 agtgctaatgaaagagcctcta 183  Q
    ||||| ||||||||||||||||    
T  1481611 agtgccaatgaaagagcctcta 1481632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 409
Target Start/End: Complemental strand, 8186486 - 8186317
Alignment:
Q  240 tcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaa 339  Q
    |||||||||||||| |||||||||||||| || |||||   ||  ||||||||||| | ||| | || |||||||||  | |||||||||||||||||||    
T  8186486 tcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaa 8186387  T
Q  340 tgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgag 409  Q
    | || || |||| | ||||||| ||||| ||||||| | || ||| ||| || |||||||| ||||||||    
T  8186386 tatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgag 8186317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 507
Target Start/End: Original strand, 1481684 - 1481836
Alignment:
Q  352 aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatc 451  Q
    |||||||||| |||||||| |||||| |||||||||| || | ||||||||||||||||||   || |||||| |  |||||||| || ||||| |||||    
T  1481684 aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagttt---caatgggaaacaggagatttgggtgagaagcgcatc 1481780  T
Q  452 gaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgta 507  Q
    ||||| |   || ||| | || ||||| |  |||||||| ||||||||||||||||    
T  1481781 gaggttaaagtagtagaaggaaaggtcaaaagaggtgagattggtgaacctttgta 1481836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 8186654 - 8186539
Alignment:
Q  66 acctcttggagaaacttgcagttcttgaacaagtgagaaagcaaagtgccgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtg 165  Q
    ||||||| ||||  ||| || ||||| ||||||||| |||||||  || ||||||  |||  ||||| ||| |||||||||||||| |||||||  ||||    
T  8186654 acctcttcgagatgcttacaattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaagtg 8186555  T
Q  166 ctaatgaaagagcctc 181  Q
    | ||||||||||||||    
T  8186554 ccaatgaaagagcctc 8186539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 661855 - 661947
Alignment:
Q  308 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 400  Q
    |||| ||||||| || ||||| ||||||||||| |   | ||||||||||||||||||||||| |||| | ||  ||||||||| ||||||||    
T  661855 gttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgag 661947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 532630 - 532692
Alignment:
Q  115 cgttgaggtagccatgataagagagattaaccttgcggagtttgatgagtgctaatgaaagag 177  Q
    |||||| |||| |||||  ||| ||||||||||||||||||||||  |||| |||||||||||    
T  532630 cgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtgataatgaaagag 532692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 7225378 - 7225324
Alignment:
Q  134 agagagattaaccttgcggagtttgatgagtgctaatgaaagagcctctagtcca 188  Q
    ||||||||||||| | ||||||||||  |||||| ||||||||||||||| ||||    
T  7225378 agagagattaaccctacggagtttgaaaagtgctgatgaaagagcctctactcca 7225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 12124517 - 12124557
Alignment:
Q  236 gaggtcgagttcttctagcaaaggaaaacaatcagcaatga 276  Q
    |||||| ||||||||||| ||||| ||||||||||||||||    
T  12124517 gaggtcaagttcttctagtaaagggaaacaatcagcaatga 12124557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 21833533 - 21833493
Alignment:
Q  138 agattaaccttgcggagtttgatgagtgctaatgaaagagc 178  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  21833533 agattaaccttgcggagtttgataagtgcaagtgaaagagc 21833493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 55907734 - 55907634
Alignment:
Q  308 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 407  Q
    |||||||||||| || ||  ||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  55907734 gttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 55907635  T
Q  408 a 408  Q
    |    
T  55907634 a 55907634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 7132323 - 7132406
Alignment:
Q  329 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 412  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7132406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 7135246 - 7135329
Alignment:
Q  329 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 412  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7135329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 7138169 - 7138252
Alignment:
Q  329 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 412  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7138252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 369
Target Start/End: Original strand, 6403528 - 6403636
Alignment:
Q  261 aaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgca 360  Q
    |||||||| ||||||||   ||||| || |||||||||||||| || || |||||||  ||| ||||||||||| || |  || || |||||||||||||    
T  6403528 aaacaatcggcaatgagtaagagatgagagctattaagagaatcaatgtcggaacaatcaagagaggtcaaagtagtgacctttcgggagaaagctcgca 6403627  T
Q  361 aaccattag 369  Q
    | |||||||    
T  6403628 acccattag 6403636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 8913479 - 8913375
Alignment:
Q  308 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 407  Q
    |||||||||| | || ||||||||||||||||| ||   ||| ||| || |||| ||||||||||||| | |   ||||||||| | |||||||||||||    
T  8913479 gttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgtg 8913380  T
Q  408 agttt 412  Q
    |||||    
T  8913379 agttt 8913375  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 1036670 - 1036570
Alignment:
Q  308 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 407  Q
    |||||||||||| || || |||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  1036670 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 1036571  T
Q  408 a 408  Q
    |    
T  1036570 a 1036570  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 393
Target Start/End: Original strand, 7555124 - 7555280
Alignment:
Q  237 aggtcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttg 336  Q
    |||| ||||||||| |||||||| ||||| |||||||||||    |  ||| ||||||| | |||||  |  ||||||||| | |||||||| |||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 7555223  T
Q  337 taatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaa 393  Q
    |||| ||  | |||||||||||||| ||| | ||||| | | || ||||||||||||    
T  7555224 taatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaa 7555280  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 19467672 - 19467627
Alignment:
Q  138 agattaaccttgcggagtttgatgagtgctaatgaaagagcctcta 183  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||    
T  19467672 agattaaccttgcggagtttgagaagtgcaagtgaaagagcctcta 19467627  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 504
Target Start/End: Original strand, 30827961 - 30827994
Alignment:
Q  471 gagaggtcgagggaggtgagtttggtgaaccttt 504  Q
    |||||||||||||||||||| |||||||||||||    
T  30827961 gagaggtcgagggaggtgagattggtgaaccttt 30827994  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 29021726 - 29021829
Alignment:
Q  240 tcgagttcttctagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaa 339  Q
    ||||||||||| |||||||| || ||||||||||| |||  ||||| ||||||||| || |  | ||||| | ||||| | || ||||||||||| ||||    
T  29021726 tcgagttcttcgagcaaagggaagcaatcagcaataagaaagagatgagtgctattgagggtttcaaggtggtaacaagtgagagaggtcaaagtagtaa 29021825  T
Q  340 tgtt 343  Q
    ||||    
T  29021826 tgtt 29021829  T

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