View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13568_low_3 (Length: 562)
Name: NF13568_low_3
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13568_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Complemental strand, 56231200 - 56230661
Alignment:
| Q |
11 |
catcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaacatcaactccatcatgaatagccatatcaaaggctgccattatatcagcatc |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231200 |
catcatcaaagtaatcagaagcatcaccaccaagagaaagggaaagaacatcaactccatcatgaatagccatatcaaaggctgccattatatcagcatc |
56231101 |
T |
|
| Q |
111 |
aaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagttccatttcctaagccaaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231100 |
aaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagttccatttcctaagccaaaa |
56231001 |
T |
|
| Q |
211 |
acattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatcaagtgtgccgttctgtagta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231000 |
acattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatcaagtgtgccgttctgtagta |
56230901 |
T |
|
| Q |
311 |
ccattgaccctgcagcataggcagcataacctttattgaagtatcttgctcctataagcttcctgcatgaaatatacattaaaaggtttaaccaaaacat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56230900 |
ccattgaccctgcagcataggcagcataacctttattgaagtatcttgctcctataagcttcctgcatgaaatatacattaaaaggtttaaccaaaacat |
56230801 |
T |
|
| Q |
411 |
ttgatggcacattttaaaatg---cttttaagatacaaatcagaatcaccggtgatatatctattaatttgctttaatcatagagatatatagtaaacac |
507 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
56230800 |
ttgatggcacattttaaaatgatttttttaagatacaaatcagaatcactggtgatatatctattaatttgctttaatcttagagacatatagtaaacac |
56230701 |
T |
|
| Q |
508 |
aagcaatactataattagcgatagtaaagaatgtgtaact |
547 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
56230700 |
aagcaatactataattagcgatagtaaagaatgtgtaact |
56230661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 39188926 - 39188524
Alignment:
| Q |
11 |
catcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaacatcaactccatcatgaatagccatatcaaaggctgccattatatcagcatc |
110 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39188926 |
catcatcaaagtaatcaacagcaggacttccaagagatatggaaagaacatcaaccccatcatgaatagccatatcaaaggctgccatgatatcagcatc |
39188827 |
T |
|
| Q |
111 |
aaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagttccatttcctaagccaaaa |
210 |
Q |
| |
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||| ||| || || |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||| | |
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| T |
39188826 |
aaagcattcgctgccatcaattggtggccagcagactttgtaagcagcaactcttgctttgggagagccacctttagcagttccgttgcctaagccaaca |
39188727 |
T |
|
| Q |
211 |
acattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatcaagtgtgccgttctgtagta |
310 |
Q |
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| |||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |||| | |
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| T |
39188726 |
aaattagctccggaaacaaagttccctcctaatgttgatagtgtgtgagatccatgacctttattatctcgtggagtatcaagtgtgccgttttgtacca |
39188627 |
T |
|
| Q |
311 |
ccattgaccctgcagcataggcagcataacctttattgaagtatcttgctcctataagcttcctgcatgaaatatacattaaaaggtttaaccaaaacat |
410 |
Q |
| |
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|| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| |
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| T |
39188626 |
cctctgaccct---gcataggtagcataacctttattgaagtatcttgctcctataagcttcctgcatgaaatatatattaaaaggttaaatcataacat |
39188530 |
T |
|
| Q |
411 |
ttgatg |
416 |
Q |
| |
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|||||| |
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|
| T |
39188529 |
ttgatg |
39188524 |
T |
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