View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13568_low_4 (Length: 475)
Name: NF13568_low_4
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13568_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 458
Target Start/End: Complemental strand, 1336563 - 1336125
Alignment:
| Q |
9 |
gaagaatatcatatcacaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtttttcttccagaagaagatattgtcaag |
108 |
Q |
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| T |
1336563 |
gaagaatatcatatcacaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtatttgttccagaagaagatattatcaag |
1336464 |
T |
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| Q |
109 |
ctatcacaaagtaagactttgtttcattcaatannnnnnnnactatatctaaaatttcgactaatgtatgtaaatgtaaatacatacataagcttacatt |
208 |
Q |
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| T |
1336463 |
ctatcacaaagtaagactttgtttcattcaatattttttttactttatctaaaatttcg------gtatgtaaatgtaaatacata----agcttacatt |
1336374 |
T |
|
| Q |
209 |
ctcattatataaaccaattagctttgtcaccaaaaattaattaactaattactactaggtttagagtttaaaattatttagtgatgataaacgaagtttt |
308 |
Q |
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| T |
1336373 |
ctcattatataaaccaattagctttgtcaccaaaaattaattaactaattactactaggtttagagtttaaaattatttagtgatgataaacgaagtttt |
1336274 |
T |
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| Q |
309 |
atgcaaactcatcatcatatttataatctatatattgtnnnnnnnnnntcatattgatataatcttatcaaatcataatattatttttaaaatatgtttc |
408 |
Q |
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| T |
1336273 |
atgcaaactcatcatcatatttataatctatatattgt-caaaaaaaatcatattgatataatcttatcaaatcataatattatttttaaaatatgtttc |
1336175 |
T |
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| Q |
409 |
ttttagggcaacaaaattgtgaaatatactaatggtaaaatatgtctttt |
458 |
Q |
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| T |
1336174 |
ttttagggcaacaaaattgtgaaatatactaatggtaaaatatgtctttt |
1336125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 1320800 - 1320682
Alignment:
| Q |
10 |
aagaatatcatatcacaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtttttcttccagaagaagatattgtcaagc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||| ||||||| |||||||||||||||| |
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| T |
1320800 |
aagaatatcatatcacaaaatgagttgatatcactatgggagctcaaaagtggtcaaaaatttcataaagtttttgttccagaggaagatattgtcaagc |
1320701 |
T |
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| Q |
110 |
tatcacaaagtaagacttt |
128 |
Q |
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| T |
1320700 |
tatcacaaagtaatacttt |
1320682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 1264101 - 1264218
Alignment:
| Q |
9 |
gaagaatatcatatcacaaaatgagttgatatcactatgggaactcaaaagtggtcaaaactttaacaaagtttttcttccagaagaagatattgtcaag |
108 |
Q |
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||||||| | ||| |||||||||||||||||||||||||||| || |||| |||||||| | |||||||||||||| |||||||||||||||||||||| |
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| T |
1264101 |
gaagaattttataacacaaaatgagttgatatcactatgggagcttaaaaatggtcaaatccttaacaaagtttttgctccagaagaagatattgtcaag |
1264200 |
T |
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| Q |
109 |
ctatcacaaagtaagact |
126 |
Q |
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| T |
1264201 |
ctatcacaaagtaagact |
1264218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 1253519 - 1253575
Alignment:
| Q |
10 |
aagaatatcatatcacaaaatgagttgatatcactatgggaactcaaaagtggtcaa |
66 |
Q |
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|||||| | ||| |||||||||||||||||| ||||||||| || |||| ||||||| |
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| T |
1253519 |
aagaattttataacacaaaatgagttgatataactatgggagcttaaaaatggtcaa |
1253575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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