View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13568_low_5 (Length: 316)

Name: NF13568_low_5
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13568_low_5
NF13568_low_5
[»] chr2 (1 HSPs)
chr2 (2-299)||(14991326-14991623)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 2 - 299
Target Start/End: Original strand, 14991326 - 14991623
Alignment:
Q  2 aggggtagagtttgcgagtatcctggtgcgaaatgtgttcagtataggggtgagtgttatacgacatgtgaaggtattccttctgaattactctactcaa 101  Q
    ||||| ||||||||||||| ||||| || |||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  14991326 aggggaagagtttgcgagtgtcctgttgtgaaaggtgttcagtataggggtgatggttatacgtcatgtgaaggtattccttctgaattactctactcaa 14991425  T
Q  102 aattctaaaaagttacctcttcctattatcagtcactacctgattactctactcaaaatgataagctattttcctcgttgctgatatgttgtttattctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14991426 aattctaaaaagttacctcttcctattatcagtcactacctgattactctactcaaaatgataagctattttcctcgttgctgatatgttgtttattctt 14991525  T
Q  202 ttctttatttgacagcttttggacctgcaagatgttctttaaacaatggaggttgttggtcagaaactagagataaaattactttctccgcttgttca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14991526 ttctttatttgacagcttttggacctgcaagatgttctttaaacaatggaggttgttggtcagaaactagagataaaattactttctccgcttgttca 14991623  T

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