View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13568_low_6 (Length: 274)
Name: NF13568_low_6
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13568_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 34683586 - 34683334
Alignment:
| Q |
8 |
ttgaatgttgtttggtcttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttccacacgagc |
107 |
Q |
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| T |
34683586 |
ttgaatgttgtttggtcttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttctacacgagc |
34683487 |
T |
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| Q |
108 |
tacaatttcactaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcaccatcttttgcannnnnnngtgtg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34683486 |
tacaatttcactaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcaccatcttttgcatttttttgtgtg |
34683387 |
T |
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| Q |
208 |
tttggataagattttaataaattctgaagctctagggctgcattattcatctc |
260 |
Q |
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| T |
34683386 |
tttggataagattttaataaattctgaagctctagggctgcattattcatctc |
34683334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 34699820 - 34699642
Alignment:
| Q |
8 |
ttgaatgttgtttggtcttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttccacacgagc |
107 |
Q |
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||||| ||||||| | |||||||| || |||||||||||||| || |||||||| | ||||| ||||||||||| ||||||||||||||||||||| || |
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| T |
34699820 |
ttgaacgttgtttagatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaatgtcttccacacgtgc |
34699721 |
T |
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| Q |
108 |
tacaatttcactaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcacca |
186 |
Q |
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|||| ||||| |||||||||||| || |||||||||||||||| ||| |||||||||||||| | ||||||||||||| |
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| T |
34699720 |
tacagtttcaataagcaaagaaattaccgtgaccacttgaattacttccattattgggatttccatttttgcatcacca |
34699642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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