View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13568_low_8 (Length: 241)
Name: NF13568_low_8
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13568_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 31055225 - 31055460
Alignment:
| Q |
1 |
ggaaataacattttgctatatatatgtttctcttttctgatatttatatttttaattaccttctccttgaagtctcggggcgaaagatactttagattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31055225 |
ggaaataacattttgctatatatatgtttctcttttctgatatttatatttttaattaccttctccttgaagtctcggggcgaaagatactttagattgg |
31055324 |
T |
|
| Q |
101 |
acgatgaacgaattttgtgctttgaatgcatggaatctgctataacagatactggtgaatgtcaacctctttatcatgctattagagactattatgaagg |
200 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31055325 |
acgatggacggattttgtgctttgaatgcatggaatctgctataacagatactggtgaatgtcaacctctttatcatgctattagagactattatgaagg |
31055424 |
T |
|
| Q |
201 |
aatgaatatgagaatcgatcaacaactccctatgct |
236 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31055425 |
aatgaatatgagaatcgatcaacaaatccctatgct |
31055460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 34743305 - 34743184
Alignment:
| Q |
115 |
ttgtgctttgaatgcatggaatctgctataacagatactggtgaatgtcaacctctttatcatgctattagagactattatgaaggaatgaatatgagaa |
214 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||||||| ||||| ||||| || ||| | || ||||| ||||||||||||||| ||||||||| |
|
|
| T |
34743305 |
ttgtgcttagagtgcatggaatctgctataatggatactggtgactgtcagcctctataccattcaatcagagattattatgaaggaatgcatatgagaa |
34743206 |
T |
|
| Q |
215 |
tcgatcaacaactccctatgct |
236 |
Q |
| |
|
| ||||| ||| | |||||||| |
|
|
| T |
34743205 |
ttgatcagcaagttcctatgct |
34743184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University