View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13568_low_9 (Length: 239)

Name: NF13568_low_9
Description: NF13568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13568_low_9
NF13568_low_9
[»] chr2 (2 HSPs)
chr2 (1-229)||(16676567-16676795)
chr2 (187-226)||(6396812-6396851)
[»] chr1 (3 HSPs)
chr1 (24-229)||(28242677-28242882)
chr1 (24-226)||(31929155-31929356)
chr1 (22-226)||(19753019-19753224)
[»] chr7 (5 HSPs)
chr7 (1-226)||(6430463-6430687)
chr7 (119-226)||(4510148-4510255)
chr7 (119-226)||(4511990-4512097)
chr7 (24-81)||(4510293-4510350)
chr7 (24-81)||(4512135-4512192)
[»] chr4 (2 HSPs)
chr4 (24-226)||(54881668-54881870)
chr4 (1-54)||(52095143-52095194)
[»] chr3 (4 HSPs)
chr3 (24-229)||(43403336-43403541)
chr3 (10-84)||(1683824-1683898)
chr3 (187-229)||(1683990-1684032)
chr3 (1-56)||(22834786-22834839)
[»] chr8 (2 HSPs)
chr8 (11-226)||(40220949-40221163)
chr8 (1-54)||(4731994-4732045)
[»] chr6 (1 HSPs)
chr6 (24-226)||(17758391-17758592)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 16676567 - 16676795
Alignment:
Q  1 tattggtgtgattttgagttactgaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagcaccacaagaaccaaagttga 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  16676567 tattggtgtgattttgagttactgaattcacaacaattcgcacccaccgtggggagaggggagaagtttgtcaagtgagcaccataagaaccaaagttga 16676666  T
Q  101 taccatggatatgaaagtaagcttggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||| |||||||||||||||||||||||||||    
T  16676667 taccatggatatgaaagtaagcttggttcaatgaaagtgtatggaagcatcgaaggatgagacagtgatatttggcaacttagtagaatcaaagaaggta 16676766  T
Q  201 aagtgttaagagaggaagtcatgatgatg 229  Q
    |||||||||||||||||||||||||||||    
T  16676767 aagtgttaagagaggaagtcatgatgatg 16676795  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 6396851 - 6396812
Alignment:
Q  187 aatcaaagaaggtaaagtgttaagagaggaagtcatgatg 226  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  6396851 aatcaaagaaggtaaagggttaagagaggaggtcatgatg 6396812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 28242677 - 28242882
Alignment:
Q  24 gaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagcaccacaagaaccaaagttgataccatggatatgaaagtaagct 123  Q
    ||||||||||||||| || |||||||||| | |||||||||||||||||||||| ||||||   | ||||||| | | | | ||||  || ||  ||||     
T  28242677 gaattcacaacaattggcgcccaccgtggagcaaggggagaagtttgtcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagca 28242776  T
Q  124 tggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggtaaagtgttaagagaggaagtcatg 223  Q
    ||||||||||||||||||||||| ||| ||||| ||||   ||||| |||| |||| ||| | ||||||||||||| |||||| ||||||||| ||||||    
T  28242777 tggttcaatgaaagtgtatggaagcattgaaggttgagacggtgatgttggtcaacctagcacaatcaaagaaggttaagtgtgaagagaggaggtcatg 28242876  T
Q  224 atgatg 229  Q
    ||||||    
T  28242877 atgatg 28242882  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 31929356 - 31929155
Alignment:
Q  24 gaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagcaccacaagaaccaaagttgataccatggatatgaaagtaagct 123  Q
    ||||||||||||||| ||  ||||||||||  |||||||||||||| ||||||| ||||||   | ||||||| | | | | ||||  || ||  ||||     
T  31929356 gaattcacaacaattggcgtccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagca 31929257  T
Q  124 tggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggtaaagtgttaagagaggaagtcatg 223  Q
    || ||||||| |||||||||||| ||| ||||| |||| | ||||| |||  |||| ||| | |||||||||||| ||||| | ||||||||| ||||||    
T  31929256 tgattcaatggaagtgtatggaagcattgaaggttgagatggtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagagaggaggtcatg 31929158  T
Q  224 atg 226  Q
    |||    
T  31929157 atg 31929155  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 19753019 - 19753224
Alignment:
Q  22 ctgaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgt-caagtgagcaccacaagaaccaaagttgataccatggatatgaaagtaa 120  Q
    ||||||||||||||||| |  |||||||||||| |||||||||||||||| |||||| ||||||   | ||||||| | | | | |||| ||| ||  ||    
T  19753019 ctgaattcacaacaattggtgcccaccgtggggcaaggggagaagtttgtccaagtgtgcaccatgggcaccaaaggttacatcttggagatggaaacaa 19753118  T
Q  121 gcttggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggtaaagtgttaagagaggaagtc 220  Q
    || || || |||| |||||||||||| ||| ||||| |||    ||||| || | |||| ||| | ||||||| || || |||||| ||||||||| |||    
T  19753119 gcatgattgaatggaagtgtatggaatcattgaaggttgaaacagtgatgttagtcaacctagcacaatcaaataaagttaagtgtgaagagaggaggtc 19753218  T
Q  221 atgatg 226  Q
    ||||||    
T  19753219 atgatg 19753224  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6430463 - 6430687
Alignment:
Q  1 tattggtgtga-ttttgagttactgaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagcaccacaagaaccaaagttg 99  Q
    ||||||||||| ||||||||  | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||   | ||||||| |     
T  6430463 tattggtgtgagttttgagt--ccgaattcacaacaattggcacccaccgtggggcaaggggagaagtttgtcaagtgtgcaccatgggtaccaaaggtt 6430560  T
Q  100 ataccatggatatgaaagtaagcttggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggt 199  Q
    | | | |||| ||| ||  |||| ||||| |||| ||||||||| ||||||  |||| ||||   ||||| || | |||| ||| | |||||||||||||    
T  6430561 acatcttggagatggaaacaagcatggttgaatggaagtgtatgaaaacattaaaggttgagacggtgatgttagtcaacctagcacaatcaaagaaggt 6430660  T
Q  200 aaagtgttaagagaggaagtcatgatg 226  Q
     |||||| ||||||||| |||||||||    
T  6430661 taagtgtgaagagaggaggtcatgatg 6430687  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 4510255 - 4510148
Alignment:
Q  119 aagcttggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggtaaagtgttaagagaggaag 218  Q
    |||| ||||| |||| |||||||||||| ||| ||||| ||||   ||||| || | |||| ||| | ||||||||||||| |||||| ||||||||| |    
T  4510255 aagcatggttgaatggaagtgtatggaagcattgaaggttgagacggtgatgttagtcaacctagcacaatcaaagaaggttaagtgtgaagagaggagg 4510156  T
Q  219 tcatgatg 226  Q
    ||||||||    
T  4510155 tcatgatg 4510148  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 4512097 - 4511990
Alignment:
Q  119 aagcttggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggtaaagtgttaagagaggaag 218  Q
    |||| ||||| |||| |||||||||||| ||| ||||| ||||   ||||| || | |||| ||| | ||||||||||||| |||||| ||||||||| |    
T  4512097 aagcatggttgaatggaagtgtatggaagcattgaaggttgagacggtgatgttagtcaacctagcacaatcaaagaaggttaagtgtgaagagaggagg 4511998  T
Q  219 tcatgatg 226  Q
    ||||||||    
T  4511997 tcatgatg 4511990  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 4510350 - 4510293
Alignment:
Q  24 gaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagca 81  Q
    ||||||||||||||| ||  ||||||| ||| |||||||||||||||||||||| |||    
T  4510350 gaattcacaacaattagccaccaccgttgggcaaggggagaagtttgtcaagtgtgca 4510293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 4512192 - 4512135
Alignment:
Q  24 gaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagca 81  Q
    ||||||||||||||| ||  ||||||| ||| |||||||||||||||||||||| |||    
T  4512192 gaattcacaacaattagccaccaccgttgggcaaggggagaagtttgtcaagtgtgca 4512135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 54881668 - 54881870
Alignment:
Q  24 gaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagcaccacaagaaccaaagttgataccatggatatgaaagtaagct 123  Q
    ||||||||||||||| || ||||| |||||| |||||||||||||||||||||| ||||||   | ||||||| | | | | |||| ||| ||  ||||     
T  54881668 gaattcacaacaattggcgcccactgtggggcaaggggagaagtttgtcaagtgtgcaccatgggtaccaaaggttacatcttggagatggaaacaagca 54881767  T
Q  124 tggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggtaaagtgttaagagaggaagtcatg 223  Q
    |||||||||  |||||||||||| ||| ||||| ||||   ||||| |||| |||| ||| | ||||||||||||| |||||| ||||||||| ||||||    
T  54881768 tggttcaatagaagtgtatggaagcattgaaggttgagacggtgatgttggtcaacctagcacaatcaaagaaggttaagtgtaaagagaggaggtcatg 54881867  T
Q  224 atg 226  Q
    |||    
T  54881868 atg 54881870  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 52095194 - 52095143
Alignment:
Q  1 tattggtgtgattttgagttactgaattcacaacaatttgcacccaccgtgggg 54  Q
    |||||||||||||||||||  | ||||||||||||||| || ||||||||||||    
T  52095194 tattggtgtgattttgagt--ccgaattcacaacaattggcgcccaccgtgggg 52095143  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 43403541 - 43403336
Alignment:
Q  24 gaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagcaccacaagaaccaaagttgataccatggatatgaaagtaagct 123  Q
    ||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||   | ||||||| | | | | | || ||| ||  ||||     
T  43403541 gaattcacaacaattggcgcccaccgtggggcaaggggagaagtttgtcaagtgtgcaccatgggtaccaaaggttacatcttcgagatggaaacaagca 43403442  T
Q  124 tggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggtaaagtgttaagagaggaagtcatg 223  Q
    ||||| || | |||||||||||| ||| ||||| ||||   ||||| |||| |||| ||| | ||||||||||||| |||| | ||||||||| ||||||    
T  43403441 tggttgaacggaagtgtatggaagcattgaaggttgagacggtgatgttggccaacctagcacaatcaaagaaggttaagtatgaagagaggaggtcatg 43403342  T
Q  224 atgatg 229  Q
    ||||||    
T  43403341 atgatg 43403336  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 1683824 - 1683898
Alignment:
Q  10 gattttgagttactgaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagcacca 84  Q
    ||||| ||||||| |||||||||| |||| ||| |||||||||  ||||  ||||||||||||||||||||||||    
T  1683824 gatttagagttaccgaattcacaataattggcatccaccgtggataaagatgagaagtttgtcaagtgagcacca 1683898  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 1683990 - 1684032
Alignment:
Q  187 aatcaaagaaggtaaagtgttaagagaggaagtcatgatgatg 229  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||    
T  1683990 aatcaaagaagataaagtgttaagaaaggaggtcatgatgatg 1684032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22834839 - 22834786
Alignment:
Q  1 tattggtgtgattttgagttactgaattcacaacaatttgcacccaccgtggggaa 56  Q
    |||||||||||||||||||  | ||||||||||||||| || |||| |||||||||    
T  22834839 tattggtgtgattttgagt--ccgaattcacaacaattggcgcccatcgtggggaa 22834786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 40221163 - 40220949
Alignment:
Q  11 attttgagttactgaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagcaccacaagaaccaaagttgataccatggat 110  Q
    |||||||||| | ||||||||||||||| || ||||| |||||| |||||| ||||||||||||||| ||||||     ||||||| | | | | ||||     
T  40221163 attttgagtt-cggaattcacaacaattggcgcccactgtggggcaaggggggaagtttgtcaagtgtgcaccatggttaccaaaggttacatcttggag 40221065  T
Q  111 atgaaagtaagcttggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggtaaagtgttaag 210  Q
     || ||  |||| |||||||||| ||||||||| || ||| ||||| ||||   ||||| |||| |||| ||| | ||||||||||||| |||||| |||    
T  40221064 gtggaaacaagcatggttcaatggaagtgtatgaaagcattgaaggttgagacggtgatgttggtcaacctagcacaatcaaagaaggttaagtgtgaag 40220965  T
Q  211 agaggaagtcatgatg 226  Q
    |||||| |||||||||    
T  40220964 agaggaggtcatgatg 40220949  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4731994 - 4732045
Alignment:
Q  1 tattggtgtgattttgagttactgaattcacaacaatttgcacccaccgtgggg 54  Q
    ||||||||||||||||||||   ||||||||||||||| || ||||||||||||    
T  4731994 tattggtgtgattttgagttc--gaattcacaacaattggcgcccaccgtgggg 4732045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 17758391 - 17758592
Alignment:
Q  24 gaattcacaacaatttgcacccaccgtggggaaaggggagaagtttgtcaagtgagcaccacaagaaccaaagttgataccatggatatgaaagtaagct 123  Q
    ||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||   | || |||| | | | | ||||  || ||  ||||     
T  17758391 gaattcacaacaattggcgcccaccgtggggcaaggggagaagtttgtcaagtgtgcaccatgggtactaaaggttacatcttggaggtggaaacaagca 17758490  T
Q  124 tggttcaatgaaagtgtatggaaacatcgaaggatgaggtcgtgatattgggcaacttagtagaatcaaagaaggtaaagtgttaagagaggaagtcatg 223  Q
    ||||| |||| |||||||||||| ||| ||||| ||||   ||||| |||| |||| ||| |||||||||||| || ||| || |||| |||| ||||||    
T  17758491 tggttgaatggaagtgtatggaagcattgaaggttgagacggtgatgttggtcaacctagcagaatcaaagaaagttaag-gtgaagataggaggtcatg 17758589  T
Q  224 atg 226  Q
    |||    
T  17758590 atg 17758592  T

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