View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13569_high_14 (Length: 315)

Name: NF13569_high_14
Description: NF13569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13569_high_14
NF13569_high_14
[»] chr8 (2 HSPs)
chr8 (1-304)||(28215822-28216125)
chr8 (1-225)||(26535505-26535727)
[»] scaffold0005 (1 HSPs)
scaffold0005 (42-302)||(239263-239522)
[»] chr4 (2 HSPs)
chr4 (42-302)||(14577853-14578112)
chr4 (1-185)||(21046662-21046845)
[»] chr7 (1 HSPs)
chr7 (1-295)||(29284575-29284868)
[»] chr5 (2 HSPs)
chr5 (42-302)||(17462136-17462395)
chr5 (5-168)||(42265981-42266144)
[»] chr3 (2 HSPs)
chr3 (1-185)||(12783855-12784039)
chr3 (95-144)||(1486387-1486436)
[»] chr2 (1 HSPs)
chr2 (55-185)||(9752576-9752706)
[»] chr6 (1 HSPs)
chr6 (90-223)||(29817320-29817453)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 28215822 - 28216125
Alignment:
Q  1 agaaccaacaactccgtgcagtgaggcaacaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagca 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215822 agaaccaacaactccctgcagtgaggcaacaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagca 28215921  T
Q  101 gtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215922 gtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataat 28216021  T
Q  201 ctgagaaatcaaaggcatgaccacacatcatataccaataagcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatcggaga 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28216022 ctgagaaatcaaaggcatgaccacacatcaaataccaataagcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatttaaaacatcggaga 28216121  T
Q  301 ataa 304  Q
    ||||    
T  28216122 ataa 28216125  T

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Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26535727 - 26535505
Alignment:
Q  1 agaaccaacaactccgtgcagtgaggcaacaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagca 100  Q
    ||||||||||||||| ||||  |||||||||| || ||  ||||| |||   |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  26535727 agaaccaacaactccctgcaacgaggcaacaagcaacagagactcattcaggtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagca 26535628  T
Q  101 gtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataat 200  Q
    |||||||||||||||||| |||||||||| |||||  || | ||||||||| ||||||||||| ||||||||||| |||||||||| ||   || |||||    
T  26535627 gtctgaagtcagccacaatgactgcgacatatatt--aaaagcatcgatgcatcaccatatctctgaaacctgcataactcaacagctctgaatcataat 26535530  T
Q  201 ctgagaaatcaaaggcatgaccaca 225  Q
    |   |||||||||| ||||||||||    
T  26535529 caacgaaatcaaagacatgaccaca 26535505  T

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Target: scaffold0005 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 42 - 302
Target Start/End: Complemental strand, 239522 - 239263
Alignment:
Q  42 actctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaaca 141  Q
    |||||||||| | |||||||| |||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||| || ||||||||||||||||    
T  239522 actctttcgagtgcaattagtccaatatcaatcatacgaatgactaggatttcaaagcattctgaagtcagccacaaggattgtgacagatattcaaaca 239423  T
Q  142 acatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatctgagaaatcaaaggcatgaccacacatcatataccaataa 241  Q
     |||||| |||||||||||||||||| || || |||||||||||| ||   ||||||||  |||||||||||| |||||||||||  || ||| ||||||    
T  239422 ccatcgacgcgtcaccatatctttgatacttg-agaactcaacagctctagataataataagagaaatcaaagacatgaccacacgacaaataacaataa 239324  T
Q  242 gcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatcggagaat 302  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||    
T  239323 gcaaaattaaccaaaacaatcctaaagctttaaaagagtcaaatctaaaacatcagagaat 239263  T

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Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 42 - 302
Target Start/End: Original strand, 14577853 - 14578112
Alignment:
Q  42 actctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaaca 141  Q
    |||||||||| | |||||||| |||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||| || ||||||||||||||||    
T  14577853 actctttcgagtgcaattagtccaatatcaatcatacgaatgactaggatttcaaagcattctgaagtcagccacaaggattgtgacagatattcaaaca 14577952  T
Q  142 acatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatctgagaaatcaaaggcatgaccacacatcatataccaataa 241  Q
     |||||| |||||||||||||||||| || || |||||||||||| ||   ||||||||  |||||||||||| |||||||||||  || ||| ||||||    
T  14577953 ccatcgacgcgtcaccatatctttgatacttg-agaactcaacagctctagataataataagagaaatcaaagacatgaccacacgacaaataacaataa 14578051  T
Q  242 gcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatcggagaat 302  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||    
T  14578052 gcaaaattaaccaaaacaatcctaaagctttaaaagagtcaaatctaaaacatcagagaat 14578112  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 21046845 - 21046662
Alignment:
Q  1 agaaccaacaactccgtgcagtgaggcaacaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagca 100  Q
    ||||||||||||||| |||||  ||||||||| || || | |||||||| | |||||||||| |||||||||| ||||||||||| ||||||||||| ||    
T  21046845 agaaccaacaactccatgcagcaaggcaacaagca-caccaactctttcaagtccaattagtccaatgtcaattatacgaatgactaggattccaaaaca 21046747  T
Q  101 gtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaaca 185  Q
    |||||||||||| |||||  ||||||||| ||||||||| | |||||| | ||||||||||||||||||||||||||||||||||    
T  21046746 gtctgaagtcagtcacaacaactgcgacaaatattcaaatagcatcgacgtgtcaccatatctttgaaacctgcagaactcaaca 21046662  T

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Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 29284868 - 29284575
Alignment:
Q  1 agaaccaacaactccgtgcagtgaggcaacaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagca 100  Q
    ||||||||||||||| ||||| |||||||||| || || |||||| || || |||||||||| |||||| |||||||||| | || || ||| |||||||    
T  29284868 agaaccaacaactccctgcagcgaggcaacaagcaaca-cgactcatttgagtccaattagtccaatgttaatcatacgacttactagaatttcaaagca 29284770  T
Q  101 gtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataat 200  Q
    ||| ||||||| ||||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |  ||   ||||||||    
T  29284769 gtccgaagtcaaccacaagtactgcgacaaatattcaaacaacatcgacacgtcaccatatctttgaaacctgcagaacgcaagaactctggataataat 29284670  T
Q  201 ctgagaaatcaaaggcatgaccacacatcatataccaataagcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatc 295  Q
     ||||||||||||||||||||| |||  || |||||||| || |||||||||||||| |||||||||||||||||| ||||||||  ||||||||    
T  29284669 atgagaaatcaaaggcatgaccccacgacaaataccaattagaaaaattaaccaaaacaaccctaaagctttaaaaaagtcaaataaaaaacatc 29284575  T

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Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 302
Target Start/End: Complemental strand, 17462395 - 17462136
Alignment:
Q  42 actctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaaca 141  Q
    ||||||| || |||||||||| ||||||||||||||| |||||  | |||||||| |||||||||||| ||||||||||||||| ||| |||||||||||    
T  17462395 actcttttgagtccaattagtccaatgtcaatcatacaaatgattaagattccaa-gcagtctgaagttagccacaaggactgcaacaaatattcaaaca 17462297  T
Q  142 acatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatctgagaaatcaaaggcatgaccacacatcatataccaataa 241  Q
    ||||| | ||||||||||||||| ||||||||||||||||||||  ||   ||||| ||| ||||||| ||||| ||||||||||  ||  |||||||||    
T  17462296 acatcaacgcgtcaccatatcttggaaacctgcagaactcaacaactctggataatgatcagagaaattaaaggtatgaccacacgacaactaccaataa 17462197  T
Q  242 gcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatcggagaat 302  Q
    ||||||||||| |||| |||| |||| | |||||||  | |||||||||||||| ||||||    
T  17462196 gcaaaattaacaaaaacaaccataaatccttaaaaggttaaaatctaaaacatcagagaat 17462136  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 42265981 - 42266144
Alignment:
Q  5 ccaacaactccgtgcagtgaggcaacaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtct 104  Q
    ||||||||||| |||||  ||||||||| || ||  ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42265981 ccaacaactccttgcagcaaggcaacaagcaacagagactctttcgagtccaattagtccaatgtcaatcatacgaatgactaggattccaaagcagtct 42266080  T
Q  105 gaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaa 168  Q
    ||| ||||||||||||||| |||||||||||||||||||||||| || ||||| ||| ||||||    
T  42266081 gaaatcagccacaaggactacgacagatattcaaacaacatcgacgcatcaccttatttttgaa 42266144  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 12783855 - 12784039
Alignment:
Q  1 agaaccaacaactccgtgcagtgaggcaacaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagca 100  Q
    ||||||||||||||| ||||| |||||||||| || ||  ||||| ||||   ||||||||| ||||| |||||||||||||||| |||||| | |||||    
T  12783855 agaaccaacaactccctgcagcgaggcaacaagcaacacggactccttcggggccaattagtccaatgccaatcatacgaatgacgaggatttctaagca 12783954  T
Q  101 gtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaaca 185  Q
     ||||||||||||||||| |||||||||| ||||||||||| |||| | |||||||||||||| ||||||||||| |||||||||    
T  12783955 ttctgaagtcagccacaatgactgcgacatatattcaaacagcatcaacgcgtcaccatatctctgaaacctgcataactcaaca 12784039  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 1486436 - 1486387
Alignment:
Q  95 aaagcagtctgaagtcagccacaaggactgcgacagatattcaaacaaca 144  Q
    ||||||||||||||| || |||||||| || |||| ||||||||||||||    
T  1486436 aaagcagtctgaagttagtcacaaggattgagacaaatattcaaacaaca 1486387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 9752576 - 9752706
Alignment:
Q  55 caattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtc 154  Q
    |||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||| | |||| ||| ||||||||| | |||||| |||||    
T  9752576 caattagtccaatgacaatcataagaatgacaaggattccaaagcaatctgaagtcagccacaacgtctgccacaaatattcaaatagcatcgacgcgtc 9752675  T
Q  155 accatatctttgaaacctgcagaactcaaca 185  Q
    ||| ||||| |||||||||||||||||||||    
T  9752676 accttatctctgaaacctgcagaactcaaca 9752706  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 29817320 - 29817453
Alignment:
Q  90 attccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttc 189  Q
    |||||||||||||| |||||||  ||||| ||  | ||  ||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||   ||    
T  29817320 attccaaagcagtcagaagtcaatcacaatgatcgtgatggatattcaaacaacatcgatgtgtcaccatatctttggaacatgcataactcaacgactc 29817419  T
Q  190 cttataataatctgagaaatcaaaggcatgacca 223  Q
     | ||||||||| |||||||||||||||||||||    
T  29817420 ttgataataatcagagaaatcaaaggcatgacca 29817453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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