View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13569_high_1_N (Length: 960)
Name: NF13569_high_1_N
Description: NF13569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13569_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 813; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 19 - 939
Target Start/End: Original strand, 53983188 - 53984106
Alignment:
| Q |
19 |
atgggcaagtatgctttcgacagcaaagttttataatatcatattaaaattaaaataaagaacaaatgcatctacgatggtatttcaagtagtgggcggg |
118 |
Q |
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| T |
53983188 |
atgggcaagtatgctttcgacagcaaagttttataatatcatattaaaattaaaataaagaacaaatgcatctacgatggtatttcaagtagtgggcggg |
53983287 |
T |
|
| Q |
119 |
gtaccaaatttcaacatgctccatgcaagacatcaaaaacttgcagtaaatgacagcagaattaagagtatccggccactactacaatacaatcaacttc |
218 |
Q |
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| T |
53983288 |
gtaccaaatttcaacatgctccatgcaagacatcaaaaacttgcagtaaatgacagcagaattaagagtatcc----actactactatacaatcaacttc |
53983383 |
T |
|
| Q |
219 |
atgatatttaaagttatcatttgcaaactcaatagtaattgagatgctcaactccggggtccattttgaggtactgtaaaaaaggaagagacaactgcta |
318 |
Q |
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| T |
53983384 |
atgatatttaaagttatcatttgcaacctcaatagtaattgagatgctcaactccggggtccattttgaggtactgtaaaaaaggaagagacaactgcta |
53983483 |
T |
|
| Q |
319 |
atcaaaagaagataaaatcaagcaaatttactacaataataaaaggaattaaggttcccttccatataaccaataacaatacctgcaagacacttagagt |
418 |
Q |
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| T |
53983484 |
atcaaaagaagataaaatcaagcaaatttactacaataataaaaggaattaaggttcccttccatataaccaataacaatacctgcaagaaacttagagt |
53983583 |
T |
|
| Q |
419 |
ggcacaagctatgtctaatggcttcatatatcttggagagatacaatcaactatcaagtattgagataatgagaggcaatacaatagtgccaaagaggaa |
518 |
Q |
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| T |
53983584 |
ggcacaagctatgtctaatggcttcatatatcttggagagatacaatcaactatcaagtattgagataatgagaggcaatacaatagtgccaaagaggaa |
53983683 |
T |
|
| Q |
519 |
ttatatatatccttacccaaatcaatccaacataatttgaggaggagcagagaagatgagatattgagaggctgcctagaggaaagatcgctgcttgcaa |
618 |
Q |
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|||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53983684 |
ttatatatatccttaccctaatcaatccaacataatttta--tataccagagaagatgagatattgagaggctgcctagaggaaagatcgctgcttgcaa |
53983781 |
T |
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| Q |
619 |
catcagagctgaagacagagcccttatctatagatgtttgatagatagaaactagggagaagcaggtgagagggagaaagagaaatttagcgttgacatt |
718 |
Q |
| |
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| T |
53983782 |
catcagagctgaagacagagcccttatctatagatgtttgatagatagaaactaaggagaagcaggtgagagggagaaagagaaatttagtgttgacatt |
53983881 |
T |
|
| Q |
719 |
gcatcttagaatctagtgagacttcttatttctatggttctcaaacagccaaagaacgaaaacaatgtcttctagtataataattacatgtttaatcttt |
818 |
Q |
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| T |
53983882 |
gcatcttagaatctagtgagacttcttatttctatggttctcaaacagccaaagaacgaaaacaatgtcttctagtataataattacatgtttaatattt |
53983981 |
T |
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| Q |
819 |
tggcaaagtcatgcacat----tacatacccttttgcgtgggcaagaggaaatacaccagtgacaaacttaa-aaacacaaatgctgaatttatacactt |
913 |
Q |
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| T |
53983982 |
tggc-aagtcatgcacattacatacatacccttttgcgtgggcaagaggaaatacaccagtgacaaacttaagaaacacaaatgctgaatttatacactt |
53984080 |
T |
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| Q |
914 |
tgttccatgtagttacatataatacc |
939 |
Q |
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||||||||||||||||| |||||||| |
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| T |
53984081 |
tgttccatgtagttacacataatacc |
53984106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 716 - 753
Target Start/End: Complemental strand, 53060774 - 53060737
Alignment:
| Q |
716 |
attgcatcttagaatctagtgagacttcttatttctat |
753 |
Q |
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| T |
53060774 |
attgcatcttagaatctagtgagacttcttaattctat |
53060737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 717 - 761
Target Start/End: Complemental strand, 37420034 - 37419990
Alignment:
| Q |
717 |
ttgcatcttagaatctagtgagacttcttatttctatggttctca |
761 |
Q |
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|||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
37420034 |
ttgcatcttagaatctagcgagacttcttaattctacggttctca |
37419990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 744
Target Start/End: Original strand, 53970157 - 53970242
Alignment:
| Q |
659 |
atagatagaaactagggagaagcaggtgagagggagaaagagaaatttagcgttgacattgcatcttagaatctagtgagacttct |
744 |
Q |
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||||||||||| ||||||||| || |||| | |||| || |||| ||| || |||||||||||||||||||||||||| |||| |
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| T |
53970157 |
atagatagaaatcagggagaagtagttgagggagagagagcaaaatctagtgtgaacattgcatcttagaatctagtgagatttct |
53970242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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