View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13569_high_4 (Length: 678)
Name: NF13569_high_4
Description: NF13569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13569_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 26 - 672
Target Start/End: Complemental strand, 39981381 - 39980735
Alignment:
| Q |
26 |
ggtaaaacaagcatacctatgcatttagcaaagagagtgcgaggaagataaccgccagttgtcacggtaagcttatcaaacactttctcaacttcagacc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981381 |
ggtaaaacaagcatacctatgcatttagcaaagagagtgcgaggaagataaccgtcagttgtcacggtaagcttatcaaacactttctcaacttcagacc |
39981282 |
T |
|
| Q |
126 |
atcctgcaccaacatcagtcttgctgataaacttgagtccagtgagagcatgagccaccgcagacttggtcctttccaatcgctttgctggttctggttt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981281 |
atcctgcaccaacatcagtcttgctgataaacttgagtccagtgagagcatgagccaccgcagacttggtcctttccaatcgctttgctggttctggttt |
39981182 |
T |
|
| Q |
226 |
tgaaaacgatgccaaacgcttcagctgctttatacgaatagtagcattttgaaccactgaagcaccaaaggatttcttcttctccaacttattcccagtc |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981181 |
tgaaaacgatgccaaacgcttcagctgctttatacgaatagtagcattttgaaccactgaagcaccaaaggatttcttcttctccaacttattcccagtc |
39981082 |
T |
|
| Q |
326 |
aaagactgtttctcatgttccccttctcccatgtcactttctgttacagttttcacactgtgtaaggcaacagagtcaccttgaatgtccatggtcacct |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981081 |
aaagactgtttctcatgttccccttctcccatgtcactttctgttacagttttcacactgtgtaaggcaacagagtcaccttgaatgtccatggtcacct |
39980982 |
T |
|
| Q |
426 |
caacatagtctgcatcttcttctatgttatggtcaatatctgtgacagatttggactcagtagtgcttaactttgtgctgttctcaggagcaatgagttc |
525 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39980981 |
caacatagtctgcatcttcttctatgttatggtcaacatctgtgacagatttggactcagtagtgcttaactttgtgctgttctcaggagcaatgagttc |
39980882 |
T |
|
| Q |
526 |
tatatctgattcatgatgatgaagatctgcagaagatcctcccatgttgctgttttgtttttctgaagcactgattcaacactttctgatctcttttgtc |
625 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39980881 |
tatatctgattcatgatgatgaagatctgcagaagatcctcccatgttgctgttttgtttttctgaagcactgattcaacactttctgatctcttttgtc |
39980782 |
T |
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| Q |
626 |
agactcatttgctcctttctgtagtagttacttactgtctctgctcc |
672 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39980781 |
agactcatttgctcctttctgtagtagttacttactgtctttgctcc |
39980735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 44912847 - 44912801
Alignment:
| Q |
371 |
acagttttcacactgtgtaaggcaacagagtcaccttgaatgtccat |
417 |
Q |
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| T |
44912847 |
acagttttaacactgtgtaaagcaacagagtcaccttgaatatccat |
44912801 |
T |
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